STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPG11SPG11 vesicle trafficking associated, spatacsin. (2411 aa)    
Predicted Functional Partners:
AP5Z1
Adaptor related protein complex 5 subunit zeta 1.
    
 
 0.957
ZFYVE26
Zinc finger FYVE-type containing 26.
   
 
 0.955
SPG7
SPG7 matrix AAA peptidase subunit, paraplegin.
      
 0.797
SPG21
AB hydrolase-1 domain-containing protein.
      
 0.785
AP5M1
Adaptor related protein complex 5 subunit mu 1; Belongs to the adaptor complexes medium subunit family.
    
 
 0.765
SPG21-2
Uncharacterized protein.
      
 0.755
SETX
Senataxin.
   
  
 0.746
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
      
 0.740
TECPR2
Tectonin beta-propeller repeat containing 2.
   
  
 0.712
ALS2
Alsin Rho guanine nucleotide exchange factor ALS2.
      
 0.710
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.