STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMCO5ATransmembrane and coiled-coil domains 5A. (303 aa)    
Predicted Functional Partners:
GCNT7
Glucosaminyl (N-acetyl) transferase family member 7.
   
  
 0.842
CFAP58
Cilia and flagella associated protein 58.
      
 0.770
LYRM4
Uncharacterized protein; Belongs to the complex I LYR family.
      
 0.706
TFAP2D
Transcription factor AP-2 delta.
      
 0.664
PGA5
Pepsin F; Shows particularly broad specificity; although bonds involving phenylalanine and leucine are preferred, many others are also cleaved to some extent; Belongs to the peptidase A1 family.
   
  
 0.648
TMPRSS5
Transmembrane serine protease 5.
      
 0.571
NCOA7
Nuclear receptor coactivator 7.
      
 0.545
DARS1
Aspartyl-tRNA synthetase.
      
 0.540
PAK5
Non-specific serine/threonine protein kinase.
   
  
 0.527
IQSEC1
IQ motif and Sec7 domain 1.
   
  
 0.498
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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