CPA4 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPA4

Carboxypeptidase A4. (422 aa)

Predicted Functional Partners:

LOC100349163

0.857

CPA1

0.854

CPA3

0.785

LXN

0.729

CTRC

0.636

CELA2A

0.636

PPY

0.556

CPM

0.508

GRB10

0.487

RTL5

0.457

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CELA2A	CPA1	ENSOCUP00000020755	ENSOCUP00000006055	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Carboxypeptidase A1.	0.915
CELA2A	CPA4	ENSOCUP00000020755	ENSOCUP00000006040	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Carboxypeptidase A4.	0.636
CELA2A	LOC100349163	ENSOCUP00000020755	ENSOCUP00000025722	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.977
CPA1	CELA2A	ENSOCUP00000006055	ENSOCUP00000020755	Carboxypeptidase A1.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.915
CPA1	CPA3	ENSOCUP00000006055	ENSOCUP00000044459	Carboxypeptidase A1.	Carboxypeptidase A3.	0.890
CPA1	CPA4	ENSOCUP00000006055	ENSOCUP00000006040	Carboxypeptidase A1.	Carboxypeptidase A4.	0.854
CPA1	CTRC	ENSOCUP00000006055	ENSOCUP00000013782	Carboxypeptidase A1.	Chymotrypsin C; Belongs to the peptidase S1 family.	0.940
CPA1	GRB10	ENSOCUP00000006055	ENSOCUP00000012878	Carboxypeptidase A1.	Growth factor receptor bound protein 10.	0.470
CPA1	LOC100349163	ENSOCUP00000006055	ENSOCUP00000025722	Carboxypeptidase A1.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.998
CPA1	LXN	ENSOCUP00000006055	ENSOCUP00000022106	Carboxypeptidase A1.	Latexin.	0.617
CPA1	PPY	ENSOCUP00000006055	ENSOCUP00000025326	Carboxypeptidase A1.	Pancreatic hormone; Pancreatic hormone is synthesized in pancreatic islets of Langerhans and acts as a regulator of pancreatic and gastrointestinal functions; Belongs to the NPY family.	0.705
CPA1	RTL5	ENSOCUP00000006055	ENSOCUP00000020512	Carboxypeptidase A1.	Retrotransposon Gag like 5.	0.439
CPA3	CPA1	ENSOCUP00000044459	ENSOCUP00000006055	Carboxypeptidase A3.	Carboxypeptidase A1.	0.890
CPA3	CPA4	ENSOCUP00000044459	ENSOCUP00000006040	Carboxypeptidase A3.	Carboxypeptidase A4.	0.785
CPA4	CELA2A	ENSOCUP00000006040	ENSOCUP00000020755	Carboxypeptidase A4.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.636
CPA4	CPA1	ENSOCUP00000006040	ENSOCUP00000006055	Carboxypeptidase A4.	Carboxypeptidase A1.	0.854
CPA4	CPA3	ENSOCUP00000006040	ENSOCUP00000044459	Carboxypeptidase A4.	Carboxypeptidase A3.	0.785
CPA4	CPM	ENSOCUP00000006040	ENSOCUP00000023439	Carboxypeptidase A4.	Uncharacterized protein.	0.508
CPA4	CTRC	ENSOCUP00000006040	ENSOCUP00000013782	Carboxypeptidase A4.	Chymotrypsin C; Belongs to the peptidase S1 family.	0.636
CPA4	GRB10	ENSOCUP00000006040	ENSOCUP00000012878	Carboxypeptidase A4.	Growth factor receptor bound protein 10.	0.487