STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100358894Uncharacterized protein. (391 aa)    
Predicted Functional Partners:
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.726
HNRNPK
Heterogeneous nuclear ribonucleoprotein K; One of the major pre-mRNA-binding proteins. Binds tenaciously to poly(C) sequences. Likely to play a role in the nuclear metabolism of hnRNAs, particularly for pre-mRNAs that contain cytidine-rich sequences. Can also bind poly(C) single-stranded DNA. Plays an important role in p53/TP53 response to DNA damage, acting at the level of both transcription activation and repression. When sumoylated, acts as a transcriptional coactivator of p53/TP53, playing a role in p21/CDKN1A and 14-3-3 sigma/SFN induction. As far as transcription repression is co [...]
   
 0.725
YTHDC2
YTH domain containing 2.
   
 0.695
TRA2B
Transformer 2 beta homolog.
  
0.693
CDC5L
Cell division cycle 5 like.
   
 
 0.684
XAB2
XPA binding protein 2.
   
 
 0.674
DDX3X
DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.
   
 0.672
PRPF8
Pre-mRNA processing factor 8.
   
 
 0.646
UBL4B
Ubiquitin-like domain-containing protein.
   
 0.638
SRSF7
CCHC-type domain-containing protein.
   
 0.635
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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