G1SST8_RABIT protein (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G1SST8_RABIT

Uncharacterized protein. (92 aa)

Predicted Functional Partners:

HMGN3

0.806

RPL8

0.800

ENSOCUP00000044498

0.799

RPL18A

0.796

G1U1Y5_RABIT

0.792

FAU

0.792

ENSOCUP00000046875

0.792

ENSOCUP00000049185

0.792

RPLP2

0.780

RPL13A

0.777

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOCUP00000044498	ENSOCUP00000046875	ENSOCUP00000044498	ENSOCUP00000046875	Ribosomal_L40e domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.987
ENSOCUP00000044498	ENSOCUP00000049185	ENSOCUP00000044498	ENSOCUP00000049185	Ribosomal_L40e domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.981
ENSOCUP00000044498	FAU	ENSOCUP00000044498	ENSOCUP00000042864	Ribosomal_L40e domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
ENSOCUP00000044498	G1SST8_RABIT	ENSOCUP00000044498	ENSOCUP00000006327	Ribosomal_L40e domain-containing protein.	Uncharacterized protein.	0.799
ENSOCUP00000044498	G1U1Y5_RABIT	ENSOCUP00000044498	ENSOCUP00000023377	Ribosomal_L40e domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.981
ENSOCUP00000044498	RPL13A	ENSOCUP00000044498	ENSOCUP00000021167	Ribosomal_L40e domain-containing protein.	Uncharacterized protein.	0.999
ENSOCUP00000044498	RPL18A	ENSOCUP00000044498	ENSOCUP00000020510	Ribosomal_L40e domain-containing protein.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
ENSOCUP00000044498	RPL8	ENSOCUP00000044498	ENSOCUP00000022437	Ribosomal_L40e domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.999
ENSOCUP00000044498	RPLP2	ENSOCUP00000044498	ENSOCUP00000016850	Ribosomal_L40e domain-containing protein.	60S acidic ribosomal protein P2; Plays an important role in the elongation step of protein synthesis.	0.998
ENSOCUP00000046875	ENSOCUP00000044498	ENSOCUP00000046875	ENSOCUP00000044498	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L40e domain-containing protein.	0.987
ENSOCUP00000046875	ENSOCUP00000049185	ENSOCUP00000046875	ENSOCUP00000049185	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.943
ENSOCUP00000046875	FAU	ENSOCUP00000046875	ENSOCUP00000042864	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.944
ENSOCUP00000046875	G1SST8_RABIT	ENSOCUP00000046875	ENSOCUP00000006327	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.792
ENSOCUP00000046875	G1U1Y5_RABIT	ENSOCUP00000046875	ENSOCUP00000023377	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.943
ENSOCUP00000046875	RPL13A	ENSOCUP00000046875	ENSOCUP00000021167	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.989
ENSOCUP00000046875	RPL18A	ENSOCUP00000046875	ENSOCUP00000020510	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.986
ENSOCUP00000046875	RPL8	ENSOCUP00000046875	ENSOCUP00000022437	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L2_C domain-containing protein.	0.983
ENSOCUP00000046875	RPLP2	ENSOCUP00000046875	ENSOCUP00000016850	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S acidic ribosomal protein P2; Plays an important role in the elongation step of protein synthesis.	0.965
ENSOCUP00000049185	ENSOCUP00000044498	ENSOCUP00000049185	ENSOCUP00000044498	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L40e domain-containing protein.	0.981
ENSOCUP00000049185	ENSOCUP00000046875	ENSOCUP00000049185	ENSOCUP00000046875	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.943