STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF39Pre-mRNA processing factor 39. (669 aa)    
Predicted Functional Partners:
CDC5L
Cell division cycle 5 like.
   
 
 0.951
RBM25
RNA binding motif protein 25.
   
 
 0.937
LOC100338668
RRM domain-containing protein.
   
 
 0.881
C12H6orf52
Trnau1ap domain-containing protein.
   
 
 0.881
NCBP1
Nuclear cap binding protein subunit 1.
    
 
 0.857
SNRNP70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 
 0.855
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 
 0.855
PRPF40B
Pre-mRNA processing factor 40 homolog B.
   
 
 0.848
SART1
Uncharacterized protein.
   
 
 0.834
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 
 0.831
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.