STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX2LIM homeobox 2. (414 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.941
SIX6
SIX homeobox 6.
   
 
 0.760
LDB2
LIM domain binding 2.
    
 0.733
DBX1
Developing brain homeobox 1.
    
 
 0.685
CITED2
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2.
    
 
 0.675
SOX9
SRY-box transcription factor 9.
    
 
 0.674
EBF1
EBF transcription factor 1.
   
 
 0.666
EMX1
Empty spiracles homeobox 1.
      
 0.663
CRX
Uncharacterized protein.
   
 
 0.645
SHH
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 
 0.626
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.