UBTD1 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

UBTD1

Ubiquitin domain containing 1. (227 aa)

Predicted Functional Partners:

UBTD2

0.907

UBE2D2

0.833

TRIM39

0.727

UBE2D1

0.679

BTRC

0.582

UBE2J1

0.526

G1SIQ0_RABIT

0.516

VCPIP1

0.495

G1TSG2_RABIT

0.490

USP40

0.486

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BTRC	G1SIQ0_RABIT	ENSOCUP00000049583	ENSOCUP00000002566	Beta-transducin repeat containing E3 ubiquitin protein ligase.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.656
BTRC	UBE2D1	ENSOCUP00000049583	ENSOCUP00000032198	Beta-transducin repeat containing E3 ubiquitin protein ligase.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.656
BTRC	UBE2D2	ENSOCUP00000049583	ENSOCUP00000026812	Beta-transducin repeat containing E3 ubiquitin protein ligase.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.869
BTRC	UBTD1	ENSOCUP00000049583	ENSOCUP00000006729	Beta-transducin repeat containing E3 ubiquitin protein ligase.	Ubiquitin domain containing 1.	0.582
G1SIQ0_RABIT	BTRC	ENSOCUP00000002566	ENSOCUP00000049583	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Beta-transducin repeat containing E3 ubiquitin protein ligase.	0.656
G1SIQ0_RABIT	TRIM39	ENSOCUP00000002566	ENSOCUP00000030633	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Tripartite motif containing 39.	0.601
G1SIQ0_RABIT	UBE2D2	ENSOCUP00000002566	ENSOCUP00000026812	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.979
G1SIQ0_RABIT	UBTD1	ENSOCUP00000002566	ENSOCUP00000006729	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin domain containing 1.	0.516
G1TSG2_RABIT	UBTD1	ENSOCUP00000019978	ENSOCUP00000006729	Josephin domain-containing protein.	Ubiquitin domain containing 1.	0.490
G1TSG2_RABIT	VCPIP1	ENSOCUP00000019978	ENSOCUP00000013059	Josephin domain-containing protein.	Valosin containing protein interacting protein 1.	0.411
TRIM39	G1SIQ0_RABIT	ENSOCUP00000030633	ENSOCUP00000002566	Tripartite motif containing 39.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.601
TRIM39	UBE2D1	ENSOCUP00000030633	ENSOCUP00000032198	Tripartite motif containing 39.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.601
TRIM39	UBTD1	ENSOCUP00000030633	ENSOCUP00000006729	Tripartite motif containing 39.	Ubiquitin domain containing 1.	0.727
UBE2D1	BTRC	ENSOCUP00000032198	ENSOCUP00000049583	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Beta-transducin repeat containing E3 ubiquitin protein ligase.	0.656
UBE2D1	TRIM39	ENSOCUP00000032198	ENSOCUP00000030633	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Tripartite motif containing 39.	0.601
UBE2D1	UBE2D2	ENSOCUP00000032198	ENSOCUP00000026812	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.979
UBE2D1	UBE2J1	ENSOCUP00000032198	ENSOCUP00000004584	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin conjugating enzyme E2 J1.	0.405
UBE2D1	UBTD1	ENSOCUP00000032198	ENSOCUP00000006729	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin domain containing 1.	0.679
UBE2D2	BTRC	ENSOCUP00000026812	ENSOCUP00000049583	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Beta-transducin repeat containing E3 ubiquitin protein ligase.	0.869
UBE2D2	G1SIQ0_RABIT	ENSOCUP00000026812	ENSOCUP00000002566	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.979