Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
USP48Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family. (1036 aa)    
Predicted Functional Partners:
TRAF1
TNF receptor-associated factor.
   
 0.976
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.886
UBA6
Ubiquitin like modifier activating enzyme 6.
    
 
 0.806
USP13
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
   
 
 0.787
UCHL3
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.782
NUP188
Nucleoporin 188.
    
   0.772
USP5
Ubiquitinyl hydrolase 1.
   
 
 0.762
USP30
Ubiquitin specific peptidase 30; Belongs to the peptidase C19 family.
    
 
 0.735
USP26
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
    
 0.685
TRAF3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.682
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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