Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUL1 | ENSOCUP00000035728 | ENSOCUP00000002198 | ENSOCUP00000035728 | Cullin 1; Belongs to the cullin family. | Zf-rbx1 domain-containing protein. | 0.960 |
CUL1 | FBXL4 | ENSOCUP00000002198 | ENSOCUP00000006816 | Cullin 1; Belongs to the cullin family. | F-box and leucine rich repeat protein 4. | 0.810 |
CUL1 | NEDD8 | ENSOCUP00000002198 | ENSOCUP00000002526 | Cullin 1; Belongs to the cullin family. | NEDD8; Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C-APPBP1 and linkage to the E2 enzyme UBE2M. Attachment of NEDD8 to cullins activates their associated E3 ubiquitin ligase activity, and thus promotes polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins (By similarity). | 0.999 |
CUL1 | SKP1 | ENSOCUP00000002198 | ENSOCUP00000020468 | Cullin 1; Belongs to the cullin family. | Uncharacterized protein; Belongs to the SKP1 family. | 0.999 |
DGUOK | FBXL4 | ENSOCUP00000003179 | ENSOCUP00000006816 | Deoxyguanosine kinase. | F-box and leucine rich repeat protein 4. | 0.764 |
DGUOK | MGME1 | ENSOCUP00000003179 | ENSOCUP00000046770 | Deoxyguanosine kinase. | Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity but is also capable of endoduclease activity on linear substrates. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair, possibly via the processing of displaced DNA containing Okazaki fragments during RNA- primed DNA synthesis on the lagging strand or via processing of DNA flaps during long-patch base excision repair; Belongs to the MGME1 family. | 0.752 |
DGUOK | POLG | ENSOCUP00000003179 | ENSOCUP00000049652 | Deoxyguanosine kinase. | DNA polymerase gamma, catalytic subunit. | 0.828 |
DGUOK | RRM2B | ENSOCUP00000003179 | ENSOCUP00000038172 | Deoxyguanosine kinase. | Ribonucleotide reductase regulatory TP53 inducible subunit M2B. | 0.864 |
DGUOK | SUCLA2 | ENSOCUP00000003179 | ENSOCUP00000023471 | Deoxyguanosine kinase. | Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.838 |
DGUOK | SUCLG1 | ENSOCUP00000003179 | ENSOCUP00000040717 | Deoxyguanosine kinase. | Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and specificity for either ATP or GTP is provided by different beta subunits. | 0.863 |
ENSOCUP00000035728 | CUL1 | ENSOCUP00000035728 | ENSOCUP00000002198 | Zf-rbx1 domain-containing protein. | Cullin 1; Belongs to the cullin family. | 0.960 |
ENSOCUP00000035728 | FBXL4 | ENSOCUP00000035728 | ENSOCUP00000006816 | Zf-rbx1 domain-containing protein. | F-box and leucine rich repeat protein 4. | 0.699 |
ENSOCUP00000035728 | NEDD8 | ENSOCUP00000035728 | ENSOCUP00000002526 | Zf-rbx1 domain-containing protein. | NEDD8; Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C-APPBP1 and linkage to the E2 enzyme UBE2M. Attachment of NEDD8 to cullins activates their associated E3 ubiquitin ligase activity, and thus promotes polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins (By similarity). | 0.986 |
ENSOCUP00000035728 | SKP1 | ENSOCUP00000035728 | ENSOCUP00000020468 | Zf-rbx1 domain-containing protein. | Uncharacterized protein; Belongs to the SKP1 family. | 0.870 |
FBXL4 | CUL1 | ENSOCUP00000006816 | ENSOCUP00000002198 | F-box and leucine rich repeat protein 4. | Cullin 1; Belongs to the cullin family. | 0.810 |
FBXL4 | DGUOK | ENSOCUP00000006816 | ENSOCUP00000003179 | F-box and leucine rich repeat protein 4. | Deoxyguanosine kinase. | 0.764 |
FBXL4 | ENSOCUP00000035728 | ENSOCUP00000006816 | ENSOCUP00000035728 | F-box and leucine rich repeat protein 4. | Zf-rbx1 domain-containing protein. | 0.699 |
FBXL4 | MGME1 | ENSOCUP00000006816 | ENSOCUP00000046770 | F-box and leucine rich repeat protein 4. | Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity but is also capable of endoduclease activity on linear substrates. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair, possibly via the processing of displaced DNA containing Okazaki fragments during RNA- primed DNA synthesis on the lagging strand or via processing of DNA flaps during long-patch base excision repair; Belongs to the MGME1 family. | 0.753 |
FBXL4 | NEDD8 | ENSOCUP00000006816 | ENSOCUP00000002526 | F-box and leucine rich repeat protein 4. | NEDD8; Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C-APPBP1 and linkage to the E2 enzyme UBE2M. Attachment of NEDD8 to cullins activates their associated E3 ubiquitin ligase activity, and thus promotes polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins (By similarity). | 0.701 |
FBXL4 | POLG | ENSOCUP00000006816 | ENSOCUP00000049652 | F-box and leucine rich repeat protein 4. | DNA polymerase gamma, catalytic subunit. | 0.677 |
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