C2orf49 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2orf49

Chromosome 2 open reading frame 49. (231 aa)

Predicted Functional Partners:

BPIFC

0.928

FAM98B

0.914

DDX1

0.905

RTRAF

0.863

C17H14orf166

0.763

DHDH

0.606

FAM98A

0.545

ZBTB8OS

0.481

LOC100353606

0.463

ND4

0.458

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPIFC	C17H14orf166	ENSOCUP00000028952	ENSOCUP00000016624	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Uncharacterized protein.	0.835
BPIFC	C2orf49	ENSOCUP00000028952	ENSOCUP00000006876	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Chromosome 2 open reading frame 49.	0.928
BPIFC	DDX1	ENSOCUP00000028952	ENSOCUP00000006066	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	DEAD-box helicase 1.	0.995
BPIFC	FAM98A	ENSOCUP00000028952	ENSOCUP00000013277	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Family with sequence similarity 98 member A.	0.715
BPIFC	FAM98B	ENSOCUP00000028952	ENSOCUP00000001533	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Family with sequence similarity 98 member B.	0.980
BPIFC	RTRAF	ENSOCUP00000028952	ENSOCUP00000039697	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	RNA transcription, translation and transport factor.	0.955
BPIFC	ZBTB8OS	ENSOCUP00000028952	ENSOCUP00000041755	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Zinc finger and BTB domain containing 8 opposite strand.	0.931
C17H14orf166	BPIFC	ENSOCUP00000016624	ENSOCUP00000028952	Uncharacterized protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.835
C17H14orf166	C2orf49	ENSOCUP00000016624	ENSOCUP00000006876	Uncharacterized protein.	Chromosome 2 open reading frame 49.	0.763
C17H14orf166	DDX1	ENSOCUP00000016624	ENSOCUP00000006066	Uncharacterized protein.	DEAD-box helicase 1.	0.921
C17H14orf166	FAM98A	ENSOCUP00000016624	ENSOCUP00000013277	Uncharacterized protein.	Family with sequence similarity 98 member A.	0.761
C17H14orf166	FAM98B	ENSOCUP00000016624	ENSOCUP00000001533	Uncharacterized protein.	Family with sequence similarity 98 member B.	0.829
C17H14orf166	ZBTB8OS	ENSOCUP00000016624	ENSOCUP00000041755	Uncharacterized protein.	Zinc finger and BTB domain containing 8 opposite strand.	0.421
C2orf49	BPIFC	ENSOCUP00000006876	ENSOCUP00000028952	Chromosome 2 open reading frame 49.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.928
C2orf49	C17H14orf166	ENSOCUP00000006876	ENSOCUP00000016624	Chromosome 2 open reading frame 49.	Uncharacterized protein.	0.763
C2orf49	DDX1	ENSOCUP00000006876	ENSOCUP00000006066	Chromosome 2 open reading frame 49.	DEAD-box helicase 1.	0.905
C2orf49	DHDH	ENSOCUP00000006876	ENSOCUP00000005550	Chromosome 2 open reading frame 49.	Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Belongs to the Gfo/Idh/MocA family.	0.606
C2orf49	FAM98A	ENSOCUP00000006876	ENSOCUP00000013277	Chromosome 2 open reading frame 49.	Family with sequence similarity 98 member A.	0.545
C2orf49	FAM98B	ENSOCUP00000006876	ENSOCUP00000001533	Chromosome 2 open reading frame 49.	Family with sequence similarity 98 member B.	0.914
C2orf49	LOC100353606	ENSOCUP00000006876	ENSOCUP00000020536	Chromosome 2 open reading frame 49.	Uncharacterized protein.	0.463