NCBP3 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NCBP3

Nuclear cap binding subunit 3. (626 aa)

Predicted Functional Partners:

NCBP1

0.983

ZC3H11A

0.933

DDX39B

0.914

NCBP2

0.890

CHTOP

0.886

THOC2

0.883

POLDIP3

0.881

THOC5

0.868

THOC7

0.865

G1U968_RABIT

0.865

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHTOP	DDX39B	ENSOCUP00000002390	ENSOCUP00000025395	FoP_duplication domain-containing protein.	DExD-box helicase 39B.	0.951
CHTOP	G1U968_RABIT	ENSOCUP00000002390	ENSOCUP00000025987	FoP_duplication domain-containing protein.	Uncharacterized protein.	0.877
CHTOP	NCBP1	ENSOCUP00000002390	ENSOCUP00000011921	FoP_duplication domain-containing protein.	Nuclear cap binding protein subunit 1.	0.662
CHTOP	NCBP2	ENSOCUP00000002390	ENSOCUP00000005821	FoP_duplication domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.493
CHTOP	NCBP3	ENSOCUP00000002390	ENSOCUP00000006950	FoP_duplication domain-containing protein.	Nuclear cap binding subunit 3.	0.886
CHTOP	POLDIP3	ENSOCUP00000002390	ENSOCUP00000013861	FoP_duplication domain-containing protein.	DNA polymerase delta interacting protein 3.	0.958
CHTOP	THOC2	ENSOCUP00000002390	ENSOCUP00000030129	FoP_duplication domain-containing protein.	THO complex 2.	0.951
CHTOP	THOC5	ENSOCUP00000002390	ENSOCUP00000031661	FoP_duplication domain-containing protein.	THO complex 5.	0.961
CHTOP	THOC7	ENSOCUP00000002390	ENSOCUP00000015570	FoP_duplication domain-containing protein.	THO complex 7.	0.921
CHTOP	ZC3H11A	ENSOCUP00000002390	ENSOCUP00000000219	FoP_duplication domain-containing protein.	Uncharacterized protein.	0.875
DDX39B	CHTOP	ENSOCUP00000025395	ENSOCUP00000002390	DExD-box helicase 39B.	FoP_duplication domain-containing protein.	0.951
DDX39B	G1U968_RABIT	ENSOCUP00000025395	ENSOCUP00000025987	DExD-box helicase 39B.	Uncharacterized protein.	0.996
DDX39B	NCBP1	ENSOCUP00000025395	ENSOCUP00000011921	DExD-box helicase 39B.	Nuclear cap binding protein subunit 1.	0.959
DDX39B	NCBP2	ENSOCUP00000025395	ENSOCUP00000005821	DExD-box helicase 39B.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.914
DDX39B	NCBP3	ENSOCUP00000025395	ENSOCUP00000006950	DExD-box helicase 39B.	Nuclear cap binding subunit 3.	0.914
DDX39B	POLDIP3	ENSOCUP00000025395	ENSOCUP00000013861	DExD-box helicase 39B.	DNA polymerase delta interacting protein 3.	0.941
DDX39B	THOC2	ENSOCUP00000025395	ENSOCUP00000030129	DExD-box helicase 39B.	THO complex 2.	0.994
DDX39B	THOC5	ENSOCUP00000025395	ENSOCUP00000031661	DExD-box helicase 39B.	THO complex 5.	0.988
DDX39B	THOC7	ENSOCUP00000025395	ENSOCUP00000015570	DExD-box helicase 39B.	THO complex 7.	0.951
DDX39B	ZC3H11A	ENSOCUP00000025395	ENSOCUP00000000219	DExD-box helicase 39B.	Uncharacterized protein.	0.872