STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMNDC1Survival motor neuron domain containing 1. (238 aa)    
Predicted Functional Partners:
DDX46
DEAD-box helicase 46.
   
 
 0.970
PHF5A
PHD finger protein 5A.
     
 0.958
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.955
RBM17
RRM_1 domain-containing protein.
   
 
 0.950
U2SURP
U2 snRNP associated SURP domain containing.
   
  0.946
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.751
SF3B4
Splicing factor 3b subunit 4.
    
 0.748
DHX15
DEAH-box helicase 15.
   
 
  0.744
SF3B3
Splicing factor 3b subunit 3.
  
 
 0.744
SF3A3
Splicing factor 3a subunit 3.
   
 0.744
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.