MYO1D protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MYO1D

Myosin ID; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1021 aa)

Predicted Functional Partners:

ACTG1

0.590

CALML5

0.499

CALM2

0.496

CALM1

0.493

NADK2

0.491

MYO9B

0.486

RAB31

0.482

BAZ1B

0.475

FAM13C

0.471

MYO1B

0.467

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTG1	CALM1	ENSOCUP00000044872	ENSOCUP00000010025	Actin gamma 1; Belongs to the actin family.	Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (By similarity).	0.440
ACTG1	MYO1B	ENSOCUP00000044872	ENSOCUP00000026507	Actin gamma 1; Belongs to the actin family.	Myosin IB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.408
ACTG1	MYO1D	ENSOCUP00000044872	ENSOCUP00000007360	Actin gamma 1; Belongs to the actin family.	Myosin ID; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.590
ACTG1	MYO9B	ENSOCUP00000044872	ENSOCUP00000012736	Actin gamma 1; Belongs to the actin family.	Myosin IXB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.497
BAZ1B	MYO1B	ENSOCUP00000027776	ENSOCUP00000026507	Bromodomain adjacent to zinc finger domain 1B.	Myosin IB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.470
BAZ1B	MYO1D	ENSOCUP00000027776	ENSOCUP00000007360	Bromodomain adjacent to zinc finger domain 1B.	Myosin ID; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.475
CALM1	ACTG1	ENSOCUP00000010025	ENSOCUP00000044872	Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (By similarity).	Actin gamma 1; Belongs to the actin family.	0.440
CALM1	CALM2	ENSOCUP00000010025	ENSOCUP00000048696	Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (By similarity).	Uncharacterized protein; Belongs to the calmodulin family.	0.440
CALM1	CALML5	ENSOCUP00000010025	ENSOCUP00000010863	Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (By similarity).	Calmodulin like 5.	0.938
CALM1	MYO1B	ENSOCUP00000010025	ENSOCUP00000026507	Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (By similarity).	Myosin IB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.648
CALM1	MYO1D	ENSOCUP00000010025	ENSOCUP00000007360	Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (By similarity).	Myosin ID; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.493
CALM1	MYO9B	ENSOCUP00000010025	ENSOCUP00000012736	Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (By similarity).	Myosin IXB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.520
CALM2	CALM1	ENSOCUP00000048696	ENSOCUP00000010025	Uncharacterized protein; Belongs to the calmodulin family.	Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (By similarity).	0.440
CALM2	MYO1B	ENSOCUP00000048696	ENSOCUP00000026507	Uncharacterized protein; Belongs to the calmodulin family.	Myosin IB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.558
CALM2	MYO1D	ENSOCUP00000048696	ENSOCUP00000007360	Uncharacterized protein; Belongs to the calmodulin family.	Myosin ID; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.496
CALM2	MYO9B	ENSOCUP00000048696	ENSOCUP00000012736	Uncharacterized protein; Belongs to the calmodulin family.	Myosin IXB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.521
CALML5	CALM1	ENSOCUP00000010863	ENSOCUP00000010025	Calmodulin like 5.	Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis (By similarity).	0.938
CALML5	MYO1B	ENSOCUP00000010863	ENSOCUP00000026507	Calmodulin like 5.	Myosin IB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.648
CALML5	MYO1D	ENSOCUP00000010863	ENSOCUP00000007360	Calmodulin like 5.	Myosin ID; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.499
CALML5	MYO9B	ENSOCUP00000010863	ENSOCUP00000012736	Calmodulin like 5.	Myosin IXB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.521