STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCF23BHLH domain-containing protein. (377 aa)    
Predicted Functional Partners:
CCDC116
Uncharacterized protein.
   
  
 0.748
EFCAB5
EF-hand calcium binding domain 5.
      
 0.730
FAM78A
Family with sequence similarity 78 member A.
   
  
 0.608
PHYHIP
Phytanoyl-CoA 2-hydroxylase interacting protein.
   
  
 0.573
GJD4
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.569
LRRC52
Leucine rich repeat containing 52.
      
 0.569
LIMS2
LIM zinc finger domain containing 2.
      
 0.546
RASL11A
RAS like family 11 member A.
      
 0.545
SLC26A10
Solute carrier family 26 member 10.
      
 0.541
CIART
Circadian associated repressor of transcription.
   
  
 0.535
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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