STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL22A1VWFA domain-containing protein. (1299 aa)    
Predicted Functional Partners:
LOC100346323
Uncharacterized protein.
   
 0.859
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.757
RNASEL
Uncharacterized protein.
   
 0.730
G1SI52_RABIT
Protein kinase domain-containing protein.
   
 0.727
TEP1
Telomerase associated protein 1.
    
 0.718
LOC100355689
NACHT domain-containing protein.
    
 0.708
ARID4A
AT-rich interaction domain 4A.
    
 0.703
ARID4B
AT-rich interaction domain 4B.
    
 0.703
TUBB3
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.
    
 0.684
COL21A1
Collagen type XXI alpha 1 chain.
  
 
0.678
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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