STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIMVimentin; Belongs to the intermediate filament family. (466 aa)    
Predicted Functional Partners:
ZEB1
Zinc finger E-box binding homeobox 1.
   
  
 0.886
SNAI2
Uncharacterized protein.
   
  
 0.874
SNAI1
Snail family transcriptional repressor 1.
      
 0.845
ACTA2
Actin, aortic smooth muscle, intermediate form; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
   
 0.834
HLA-DRA
Integral membrane protein; Belongs to the MHC class II family.
    
 
 0.834
CD44
CD44 molecule (Indian blood group).
   
  
 0.820
CDH2
Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.
    
 
 0.819
COL1A1
Collagen alpha-1(I) chain.
   
 
 0.814
ZEB2
Zinc finger E-box binding homeobox 2.
      
 0.810
DES
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
 
0.785
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.