Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ATPAF1ATP synthase mitochondrial F1 complex assembly factor 1. (351 aa)    
Predicted Functional Partners:
ATP5F1B
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.911
CDCA8
Cell division cycle associated 8.
    
 
 0.691
ATP23
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.
   
  
 0.654
LOC100353151
Uncharacterized protein.
   
 
 0.649
U3KNQ1_RABIT
Uncharacterized protein.
   
 
 0.649
ENSOCUP00000041993
Uncharacterized protein.
   
 
 0.649
ATP5F1A
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.638
ATP5F1C
ATP synthase subunit gamma.
   
  
 0.628
PUM1
Pumilio RNA binding family member 1.
    
 
 0.600
PUM2
Pumilio RNA binding family member 2.
    
 
 0.600
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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