RUNDC1 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RUNDC1

RUN domain containing 1. (613 aa)

Predicted Functional Partners:

PTGES3L

0.842

VPS51

0.724

RAB2B

0.655

OXSR1

0.650

CADPS2

0.626

WSB1

0.626

VPS54

0.611

VPS53

0.592

CCDC186

0.545

AP2B1

0.541

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP2B1	PTGES3L	ENSOCUP00000003523	ENSOCUP00000016566	AP complex subunit beta.	Prostaglandin E synthase 3 like.	0.568
AP2B1	RUNDC1	ENSOCUP00000003523	ENSOCUP00000007998	AP complex subunit beta.	RUN domain containing 1.	0.541
CADPS2	RUNDC1	ENSOCUP00000006424	ENSOCUP00000007998	Calcium dependent secretion activator 2.	RUN domain containing 1.	0.626
CCDC186	RAB2B	ENSOCUP00000006285	ENSOCUP00000000293	Coiled-coil domain containing 186.	Ras-related protein Rab-2A; Required for protein transport from the endoplasmic reticulum to the Golgi complex; Belongs to the small GTPase superfamily. Rab family.	0.442
CCDC186	RUNDC1	ENSOCUP00000006285	ENSOCUP00000007998	Coiled-coil domain containing 186.	RUN domain containing 1.	0.545
CCDC186	VPS51	ENSOCUP00000006285	ENSOCUP00000000709	Coiled-coil domain containing 186.	VPS51 subunit of GARP complex.	0.847
CCDC186	VPS53	ENSOCUP00000006285	ENSOCUP00000027176	Coiled-coil domain containing 186.	VPS53 subunit of GARP complex.	0.452
CCDC186	VPS54	ENSOCUP00000006285	ENSOCUP00000001852	Coiled-coil domain containing 186.	VPS54 subunit of GARP complex.	0.856
OXSR1	PTGES3L	ENSOCUP00000046421	ENSOCUP00000016566	Protein kinase domain-containing protein.	Prostaglandin E synthase 3 like.	0.722
OXSR1	RUNDC1	ENSOCUP00000046421	ENSOCUP00000007998	Protein kinase domain-containing protein.	RUN domain containing 1.	0.650
PTGES3L	AP2B1	ENSOCUP00000016566	ENSOCUP00000003523	Prostaglandin E synthase 3 like.	AP complex subunit beta.	0.568
PTGES3L	OXSR1	ENSOCUP00000016566	ENSOCUP00000046421	Prostaglandin E synthase 3 like.	Protein kinase domain-containing protein.	0.722
PTGES3L	RUNDC1	ENSOCUP00000016566	ENSOCUP00000007998	Prostaglandin E synthase 3 like.	RUN domain containing 1.	0.842
PTGES3L	WSB1	ENSOCUP00000016566	ENSOCUP00000040966	Prostaglandin E synthase 3 like.	WD repeat and SOCS box containing 1.	0.657
RAB2B	CCDC186	ENSOCUP00000000293	ENSOCUP00000006285	Ras-related protein Rab-2A; Required for protein transport from the endoplasmic reticulum to the Golgi complex; Belongs to the small GTPase superfamily. Rab family.	Coiled-coil domain containing 186.	0.442
RAB2B	RUNDC1	ENSOCUP00000000293	ENSOCUP00000007998	Ras-related protein Rab-2A; Required for protein transport from the endoplasmic reticulum to the Golgi complex; Belongs to the small GTPase superfamily. Rab family.	RUN domain containing 1.	0.655
RAB2B	VPS51	ENSOCUP00000000293	ENSOCUP00000000709	Ras-related protein Rab-2A; Required for protein transport from the endoplasmic reticulum to the Golgi complex; Belongs to the small GTPase superfamily. Rab family.	VPS51 subunit of GARP complex.	0.434
RAB2B	VPS53	ENSOCUP00000000293	ENSOCUP00000027176	Ras-related protein Rab-2A; Required for protein transport from the endoplasmic reticulum to the Golgi complex; Belongs to the small GTPase superfamily. Rab family.	VPS53 subunit of GARP complex.	0.464
RAB2B	VPS54	ENSOCUP00000000293	ENSOCUP00000001852	Ras-related protein Rab-2A; Required for protein transport from the endoplasmic reticulum to the Golgi complex; Belongs to the small GTPase superfamily. Rab family.	VPS54 subunit of GARP complex.	0.499
RUNDC1	AP2B1	ENSOCUP00000007998	ENSOCUP00000003523	RUN domain containing 1.	AP complex subunit beta.	0.541