STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX5LIM homeobox 5. (402 aa)    
Predicted Functional Partners:
CCNK
Cyclin K; Belongs to the cyclin family.
    
   0.817
LDB1
LIM domain binding 1.
    
 0.748
TLX3
T cell leukemia homeobox 3.
  
 
 
 0.746
PAX2
Paired box 2.
   
 
 0.684
DBX1
Developing brain homeobox 1.
   
 
 0.627
TLX1
T cell leukemia homeobox 1.
    
 
 0.623
LDB2
LIM domain binding 2.
    
 0.607
EMX2
Empty spiracles homeobox 2.
      
 0.593
BARHL1
BarH like homeobox 1.
   
 
 0.577
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.571
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.