STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD1LChromodomain helicase DNA binding protein 1 like. (825 aa)    
Predicted Functional Partners:
G1SFT5_RABIT
Uncharacterized protein.
 
  
 
 0.906
CHD2
DUF4208 domain-containing protein.
 
  
 
 0.881
ENSOCUP00000030999
CHDCT2 domain-containing protein.
 
  
 
 0.877
PARP1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
   
 0.873
PRKAB2
Protein kinase AMP-activated non-catalytic subunit beta 2.
   
 
 0.832
BIVM
Uncharacterized protein.
   
 0.807
PARP2
Poly [ADP-ribose] polymerase.
   
 0.786
POLE3
DNA polymerase epsilon 3, accessory subunit.
    
 0.784
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 0.774
XPA
XPA, DNA damage recognition and repair factor.
    
 0.758
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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