STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM178ATransmembrane protein 178A. (297 aa)    
Predicted Functional Partners:
TMEM94
Transmembrane protein 94.
      
 0.856
TMEM204
Transmembrane protein 204.
   
  
 0.759
FTSJ3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
      
 0.716
TMEM97
Transmembrane protein 97.
      
 0.712
TMEM88
Transmembrane protein 88.
      
 0.692
INTS2
Integrator complex subunit 2.
      
 0.653
SLC4A11
Solute carrier family 4 member 11.
   
  
 0.622
INTS5
Integrator complex subunit 5.
   
  
 0.620
INTS8
Integrator complex subunit 8.
      
 0.592
ARSJ
Sulfatase domain-containing protein.
      
 0.585
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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