SLC13A5 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC13A5

Solute carrier family 13 member 5. (664 aa)

Predicted Functional Partners:

SLC25A1

0.740

LOC100352679

0.714

SLC10A7

0.625

CNNM4

0.621

ROGDI

0.613

SLC15A5

0.575

FAM20A

0.568

SLC24A4

0.561

ZACN

0.543

AMTN

0.530

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMTN	CNNM4	ENSOCUP00000002235	ENSOCUP00000016996	Amelotin.	Cyclin and CBS domain divalent metal cation transport mediator 4.	0.560
AMTN	FAM20A	ENSOCUP00000002235	ENSOCUP00000011811	Amelotin.	FAM20A golgi associated secretory pathway pseudokinase.	0.779
AMTN	SLC10A7	ENSOCUP00000002235	ENSOCUP00000037117	Amelotin.	Solute carrier family 10 member 7.	0.528
AMTN	SLC13A5	ENSOCUP00000002235	ENSOCUP00000008510	Amelotin.	Solute carrier family 13 member 5.	0.530
AMTN	SLC24A4	ENSOCUP00000002235	ENSOCUP00000013362	Amelotin.	Solute carrier family 24 member 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.621
CNNM4	AMTN	ENSOCUP00000016996	ENSOCUP00000002235	Cyclin and CBS domain divalent metal cation transport mediator 4.	Amelotin.	0.560
CNNM4	FAM20A	ENSOCUP00000016996	ENSOCUP00000011811	Cyclin and CBS domain divalent metal cation transport mediator 4.	FAM20A golgi associated secretory pathway pseudokinase.	0.573
CNNM4	SLC10A7	ENSOCUP00000016996	ENSOCUP00000037117	Cyclin and CBS domain divalent metal cation transport mediator 4.	Solute carrier family 10 member 7.	0.597
CNNM4	SLC13A5	ENSOCUP00000016996	ENSOCUP00000008510	Cyclin and CBS domain divalent metal cation transport mediator 4.	Solute carrier family 13 member 5.	0.621
CNNM4	SLC24A4	ENSOCUP00000016996	ENSOCUP00000013362	Cyclin and CBS domain divalent metal cation transport mediator 4.	Solute carrier family 24 member 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.568
FAM20A	AMTN	ENSOCUP00000011811	ENSOCUP00000002235	FAM20A golgi associated secretory pathway pseudokinase.	Amelotin.	0.779
FAM20A	CNNM4	ENSOCUP00000011811	ENSOCUP00000016996	FAM20A golgi associated secretory pathway pseudokinase.	Cyclin and CBS domain divalent metal cation transport mediator 4.	0.573
FAM20A	SLC10A7	ENSOCUP00000011811	ENSOCUP00000037117	FAM20A golgi associated secretory pathway pseudokinase.	Solute carrier family 10 member 7.	0.570
FAM20A	SLC13A5	ENSOCUP00000011811	ENSOCUP00000008510	FAM20A golgi associated secretory pathway pseudokinase.	Solute carrier family 13 member 5.	0.568
FAM20A	SLC24A4	ENSOCUP00000011811	ENSOCUP00000013362	FAM20A golgi associated secretory pathway pseudokinase.	Solute carrier family 24 member 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.668
LOC100352679	SLC13A5	ENSOCUP00000003073	ENSOCUP00000008510	VWFA domain-containing protein.	Solute carrier family 13 member 5.	0.714
LOC100352679	ZACN	ENSOCUP00000003073	ENSOCUP00000000371	VWFA domain-containing protein.	Zinc activated ion channel; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.767
ROGDI	SLC13A5	ENSOCUP00000037668	ENSOCUP00000008510	Rogdi atypical leucine zipper.	Solute carrier family 13 member 5.	0.613
SLC10A7	AMTN	ENSOCUP00000037117	ENSOCUP00000002235	Solute carrier family 10 member 7.	Amelotin.	0.528
SLC10A7	CNNM4	ENSOCUP00000037117	ENSOCUP00000016996	Solute carrier family 10 member 7.	Cyclin and CBS domain divalent metal cation transport mediator 4.	0.597