STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB8BRAB8B, member RAS oncogene family. (268 aa)    
Predicted Functional Partners:
RAB3IP
RAB3A interacting protein.
    
 0.886
PLD1
Phospholipase.
   
 
 0.818
SNCAIP
Synuclein alpha interacting protein.
     
 0.803
RABIF
RAB interacting factor.
    
 
 0.797
PEX5L
Peroxisomal biogenesis factor 5 like.
      
 0.780
OCRL
OCRL inositol polyphosphate-5-phosphatase.
    
 0.779
RAB3IL1
RAB3A interacting protein like 1.
    
 0.771
RILPL1
Rab interacting lysosomal protein like 1.
    
 0.756
RAB1A
RAB1A, member RAS oncogene family.
  
0.737
EHBP1
EH domain binding protein 1.
    
 0.734
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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