STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMCD1LIM and cysteine rich domains 1. (365 aa)    
Predicted Functional Partners:
GATA4
GATA binding protein 4.
    
 0.771
VSTM2B
V-set and transmembrane domain containing 2B.
      
 0.715
GATA1
GATA binding protein 1.
    
 0.607
DCHS1
Dachsous cadherin-related 1.
   
 
 0.592
PROX2
Prospero homeobox 2.
   
  
 0.547
ZNF280C
Zinc finger protein 280C.
    
 
 0.542
DVL2
Dishevelled segment polarity protein 2.
   
 0.511
DVL3
Dishevelled segment polarity protein 3.
    
 0.511
ZNF75A
Zinc finger protein 75a.
    
 
 0.504
KANK4
KN motif and ankyrin repeat domains 4.
   
 0.502
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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