STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GKN1Gastrokine 1. (183 aa)    
Predicted Functional Partners:
GCNT4
Glucosaminyl (N-acetyl) transferase 4.
      
 0.697
A4GNT
Alpha-1,4-N-acetylglucosaminyltransferase.
      
 0.674
GKN2
BRICHOS domain-containing protein.
  
  
0.669
VSIG1
V-set and immunoglobulin domain containing 1.
   
  
 0.667
ATP4B
Potassium-transporting ATPase subunit beta; Required for stabilization and maturation of the catalytic proton pump alpha subunit and may also involved in cell adhesion and establishing epithelial cell polarity.
   
  
 0.631
LIPF
Lipase; Belongs to the AB hydrolase superfamily. Lipase family.
   
  
 0.629
TFF1
Trefoil factor 1.
   
  
 0.579
TSC22D2
TSC22 domain family member 2.
      
 0.568
ATP4A
Potassium-transporting ATPase alpha chain 1; Catalyzes the hydrolysis of ATP coupled with the exchange of H(+) and K(+) ions across the plasma membrane. Responsible for acid production in the stomach; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIC subfamily.
   
  
 0.568
CAPN9
Calpain 9; Belongs to the peptidase C2 family.
   
  
 0.547
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
Server load: medium (50%) [HD]