RBM12B protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RBM12B

RNA binding motif protein 12B. (872 aa)

Predicted Functional Partners:

YLPM1

0.648

MTCL1

0.640

GSPT2

0.637

GSPT1

0.637

LTN1

0.604

ANLN

0.570

RBM10

0.560

ASB12

0.503

TASOR

0.488

ZNF692

0.474

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANLN	RBM12B	ENSOCUP00000030270	ENSOCUP00000008919	Anillin actin binding protein.	RNA binding motif protein 12B.	0.570
ASB12	RBM12B	ENSOCUP00000019670	ENSOCUP00000008919	Ankyrin repeat and SOCS box containing 12.	RNA binding motif protein 12B.	0.503
GSPT1	RBM12B	ENSOCUP00000030890	ENSOCUP00000008919	G1 to S phase transition 1.	RNA binding motif protein 12B.	0.637
GSPT2	RBM12B	ENSOCUP00000028227	ENSOCUP00000008919	G1 to S phase transition 2.	RNA binding motif protein 12B.	0.637
LTN1	MTCL1	ENSOCUP00000046370	ENSOCUP00000049726	Listerin E3 ubiquitin protein ligase 1.	Microtubule crosslinking factor 1.	0.640
LTN1	RBM12B	ENSOCUP00000046370	ENSOCUP00000008919	Listerin E3 ubiquitin protein ligase 1.	RNA binding motif protein 12B.	0.604
MTCL1	LTN1	ENSOCUP00000049726	ENSOCUP00000046370	Microtubule crosslinking factor 1.	Listerin E3 ubiquitin protein ligase 1.	0.640
MTCL1	RBM12B	ENSOCUP00000049726	ENSOCUP00000008919	Microtubule crosslinking factor 1.	RNA binding motif protein 12B.	0.640
RBM10	RBM12B	ENSOCUP00000022556	ENSOCUP00000008919	RNA binding motif protein 10.	RNA binding motif protein 12B.	0.560
RBM12B	ANLN	ENSOCUP00000008919	ENSOCUP00000030270	RNA binding motif protein 12B.	Anillin actin binding protein.	0.570
RBM12B	ASB12	ENSOCUP00000008919	ENSOCUP00000019670	RNA binding motif protein 12B.	Ankyrin repeat and SOCS box containing 12.	0.503
RBM12B	GSPT1	ENSOCUP00000008919	ENSOCUP00000030890	RNA binding motif protein 12B.	G1 to S phase transition 1.	0.637
RBM12B	GSPT2	ENSOCUP00000008919	ENSOCUP00000028227	RNA binding motif protein 12B.	G1 to S phase transition 2.	0.637
RBM12B	LTN1	ENSOCUP00000008919	ENSOCUP00000046370	RNA binding motif protein 12B.	Listerin E3 ubiquitin protein ligase 1.	0.604
RBM12B	MTCL1	ENSOCUP00000008919	ENSOCUP00000049726	RNA binding motif protein 12B.	Microtubule crosslinking factor 1.	0.640
RBM12B	RBM10	ENSOCUP00000008919	ENSOCUP00000022556	RNA binding motif protein 12B.	RNA binding motif protein 10.	0.560
RBM12B	TASOR	ENSOCUP00000008919	ENSOCUP00000011420	RNA binding motif protein 12B.	Transcription activation suppressor.	0.488
RBM12B	YLPM1	ENSOCUP00000008919	ENSOCUP00000046743	RNA binding motif protein 12B.	YLP motif containing 1.	0.648
RBM12B	ZNF692	ENSOCUP00000008919	ENSOCUP00000027593	RNA binding motif protein 12B.	Zinc finger protein 692.	0.474
TASOR	RBM12B	ENSOCUP00000011420	ENSOCUP00000008919	Transcription activation suppressor.	RNA binding motif protein 12B.	0.488