UXT protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UXT

Ubiquitously expressed prefoldin like chaperone. (157 aa)

Predicted Functional Partners:

PDRG1

0.991

WDR92

0.987

PFDN6

0.976

PFDN2

0.970

RPAP3

0.947

URI1

0.938

PIH1D1

0.909

RUVBL1

0.807

RUVBL2

0.790

RPAP2

0.751

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDRG1	PFDN2	ENSOCUP00000014360	ENSOCUP00000002055	P53 and DNA damage regulated 1.	Prefoldin subunit 2.	0.989
PDRG1	PFDN6	ENSOCUP00000014360	ENSOCUP00000009098	P53 and DNA damage regulated 1.	Prefoldin subunit 6.	0.982
PDRG1	PIH1D1	ENSOCUP00000014360	ENSOCUP00000003313	P53 and DNA damage regulated 1.	PIH1 domain containing 1.	0.928
PDRG1	RPAP3	ENSOCUP00000014360	ENSOCUP00000038970	P53 and DNA damage regulated 1.	RNA polymerase II associated protein 3.	0.948
PDRG1	RUVBL1	ENSOCUP00000014360	ENSOCUP00000032883	P53 and DNA damage regulated 1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.746
PDRG1	RUVBL2	ENSOCUP00000014360	ENSOCUP00000046723	P53 and DNA damage regulated 1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.613
PDRG1	URI1	ENSOCUP00000014360	ENSOCUP00000047280	P53 and DNA damage regulated 1.	URI1 prefoldin like chaperone.	0.790
PDRG1	UXT	ENSOCUP00000014360	ENSOCUP00000009071	P53 and DNA damage regulated 1.	Ubiquitously expressed prefoldin like chaperone.	0.991
PDRG1	WDR92	ENSOCUP00000014360	ENSOCUP00000005274	P53 and DNA damage regulated 1.	WD repeat domain 92.	0.971
PFDN2	PDRG1	ENSOCUP00000002055	ENSOCUP00000014360	Prefoldin subunit 2.	P53 and DNA damage regulated 1.	0.989
PFDN2	PFDN6	ENSOCUP00000002055	ENSOCUP00000009098	Prefoldin subunit 2.	Prefoldin subunit 6.	0.999
PFDN2	PIH1D1	ENSOCUP00000002055	ENSOCUP00000003313	Prefoldin subunit 2.	PIH1 domain containing 1.	0.845
PFDN2	RPAP2	ENSOCUP00000002055	ENSOCUP00000001552	Prefoldin subunit 2.	RNA polymerase II associated protein 2.	0.553
PFDN2	RPAP3	ENSOCUP00000002055	ENSOCUP00000038970	Prefoldin subunit 2.	RNA polymerase II associated protein 3.	0.941
PFDN2	RUVBL1	ENSOCUP00000002055	ENSOCUP00000032883	Prefoldin subunit 2.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.816
PFDN2	RUVBL2	ENSOCUP00000002055	ENSOCUP00000046723	Prefoldin subunit 2.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.793
PFDN2	URI1	ENSOCUP00000002055	ENSOCUP00000047280	Prefoldin subunit 2.	URI1 prefoldin like chaperone.	0.910
PFDN2	UXT	ENSOCUP00000002055	ENSOCUP00000009071	Prefoldin subunit 2.	Ubiquitously expressed prefoldin like chaperone.	0.970
PFDN2	WDR92	ENSOCUP00000002055	ENSOCUP00000005274	Prefoldin subunit 2.	WD repeat domain 92.	0.966
PFDN6	PDRG1	ENSOCUP00000009098	ENSOCUP00000014360	Prefoldin subunit 6.	P53 and DNA damage regulated 1.	0.982