STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIGNL1Fidgetin like 1; Belongs to the AAA ATPase family. (677 aa)    
Predicted Functional Partners:
UBXN7
UBX domain-containing protein.
   
 0.947
IST1
IST1 factor associated with ESCRT-III.
    
 0.775
SWSAP1
SWIM-type zinc finger 7 associated protein 1.
    
 
 0.768
ENSOCUP00000038708
Uncharacterized protein.
   
 0.733
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
   
 0.703
LOC103348513
Uncharacterized protein.
    
 0.690
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.689
CCDC150
Coiled-coil domain containing 150.
   
  
 0.688
CHMP7
Charged multivesicular body protein 7.
   
 
 0.654
NEMP1
Nuclear envelope integral membrane protein 1.
   
 
 0.620
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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