STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL8A2Collagen type VIII alpha 2 chain. (705 aa)    
Predicted Functional Partners:
SLC4A11
Solute carrier family 4 member 11.
      
 0.899
COL6A2
Uncharacterized protein.
 
 
 0.886
COL8A1
Collagen alpha-1(VIII) chain; Macromolecular component of the subendothelium. Major component of the Descemet's membrane (basement membrane) of corneal endothelial cells. Also component of the endothelia of blood vessels. Necessary for migration and proliferation of vascular smooth muscle cells and thus, has a potential role in the maintenance of vessel wall integrity and structure, in particular in atherogenesis (By similarity).
  
0.840
LOXHD1
Uncharacterized protein.
    
 0.779
CYYR1
Cysteine and tyrosine rich 1.
   
  
 0.766
AGBL1
ATP/GTP binding protein like 1.
   
  
 0.753
COL5A1
Fibrillar collagen NC1 domain-containing protein.
 
 
 0.641
ADAMTS10
ADAM metallopeptidase with thrombospondin type 1 motif 10.
    
 0.638
COL14A1
Collagen type XIV alpha 1 chain.
  
 
 0.615
ZEB1
Zinc finger E-box binding homeobox 1.
      
 0.600
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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