STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF19BRBR-type E3 ubiquitin transferase. (510 aa)    
Predicted Functional Partners:
RNFT1
Uncharacterized protein.
      
 0.608
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.596
CGRRF1
Cell growth regulator with ring finger domain 1.
   
 
 0.591
HERC6
HECT and RLD domain containing E3 ubiquitin protein ligase family member 6.
   
 
 0.591
NEURL3
Neuralized E3 ubiquitin protein ligase 3.
   
  
 0.587
RNF216
Ring finger protein 216.
    
 0.584
UBE2L6
Ubiquitin conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.575
UCKL1
Uncharacterized protein.
    
 
 0.569
ASB7
Ankyrin repeat and SOCS box containing 7.
    
 0.554
DCUN1D2
DCN1-like protein.
    
 
 0.546
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.