TCEA3 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCEA3

Uncharacterized protein. (161 aa)

Predicted Functional Partners:

POLR2B

0.917

POLR2C

0.913

POLR2J

0.909

POLR2F

0.907

POLR2H

0.897

POLR2G

0.889

SUPT4H1

0.886

SUPT5H

0.874

GTF2E1

0.856

POLR2L

0.841

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GTF2E1	POLR2B	ENSOCUP00000002414	ENSOCUP00000014066	General transcription factor IIE subunit 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983
GTF2E1	POLR2C	ENSOCUP00000002414	ENSOCUP00000012875	General transcription factor IIE subunit 1.	RNA polymerase II subunit C.	0.970
GTF2E1	POLR2F	ENSOCUP00000002414	ENSOCUP00000010376	General transcription factor IIE subunit 1.	RNA polymerase II subunit F.	0.992
GTF2E1	POLR2G	ENSOCUP00000002414	ENSOCUP00000008180	General transcription factor IIE subunit 1.	RNA polymerase II subunit G.	0.993
GTF2E1	POLR2H	ENSOCUP00000002414	ENSOCUP00000006120	General transcription factor IIE subunit 1.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.974
GTF2E1	POLR2J	ENSOCUP00000002414	ENSOCUP00000016720	General transcription factor IIE subunit 1.	RNA polymerase II subunit J.	0.963
GTF2E1	POLR2L	ENSOCUP00000002414	ENSOCUP00000023946	General transcription factor IIE subunit 1.	Uncharacterized protein.	0.993
GTF2E1	SUPT4H1	ENSOCUP00000002414	ENSOCUP00000022993	General transcription factor IIE subunit 1.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.554
GTF2E1	SUPT5H	ENSOCUP00000002414	ENSOCUP00000001861	General transcription factor IIE subunit 1.	Transcription elongation factor SPT5.	0.700
GTF2E1	TCEA3	ENSOCUP00000002414	ENSOCUP00000012084	General transcription factor IIE subunit 1.	Uncharacterized protein.	0.856
POLR2B	GTF2E1	ENSOCUP00000014066	ENSOCUP00000002414	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	General transcription factor IIE subunit 1.	0.983
POLR2B	POLR2C	ENSOCUP00000014066	ENSOCUP00000012875	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit C.	0.999
POLR2B	POLR2F	ENSOCUP00000014066	ENSOCUP00000010376	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit F.	0.999
POLR2B	POLR2G	ENSOCUP00000014066	ENSOCUP00000008180	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit G.	0.999
POLR2B	POLR2H	ENSOCUP00000014066	ENSOCUP00000006120	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
POLR2B	POLR2J	ENSOCUP00000014066	ENSOCUP00000016720	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit J.	0.999
POLR2B	POLR2L	ENSOCUP00000014066	ENSOCUP00000023946	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
POLR2B	SUPT4H1	ENSOCUP00000014066	ENSOCUP00000022993	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.999
POLR2B	SUPT5H	ENSOCUP00000014066	ENSOCUP00000001861	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT5.	0.998
POLR2B	TCEA3	ENSOCUP00000014066	ENSOCUP00000012084	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.917