STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF144ARBR-type E3 ubiquitin transferase. (302 aa)    
Predicted Functional Partners:
RNFT2
Ring finger protein, transmembrane 2.
      
 0.729
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.719
RNF183
Ring finger protein 183.
    
 0.705
RNFT1
Uncharacterized protein.
      
 0.703
G1SK22_RABIT
Ubiquitin-like domain-containing protein.
    
 0.648
G1TZL0_RABIT
Ubiquitin-like domain-containing protein.
    
 0.648
ENSOCUP00000044498
Ribosomal_L40e domain-containing protein.
    
  0.638
RNF216
Ring finger protein 216.
    
0.634
OTULIN
OTU deubiquitinase with linear linkage specificity.
   
 0.607
ENSOCUP00000047714
Ubiquitin-like domain-containing protein.
    
 0.580
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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