CCDC141 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCDC141

Ig-like domain-containing protein. (1529 aa)

Predicted Functional Partners:

EFCAB11

0.802

KLHL38

0.750

CER1

0.728

G1TTX7_RABIT

0.713

UNC45B

0.663

PES1

0.625

ZSWIM2

0.614

LGI2

0.612

SLC35F1

0.611

TEX10

0.605

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC141	CER1	ENSOCUP00000014572	ENSOCUP00000008936	Ig-like domain-containing protein.	Cerberus 1, DAN family BMP antagonist.	0.728
CCDC141	EFCAB11	ENSOCUP00000014572	ENSOCUP00000013314	Ig-like domain-containing protein.	EF-hand calcium binding domain 11.	0.802
CCDC141	G1TTX7_RABIT	ENSOCUP00000014572	ENSOCUP00000020500	Ig-like domain-containing protein.	Uncharacterized protein.	0.713
CCDC141	KLHL38	ENSOCUP00000014572	ENSOCUP00000010127	Ig-like domain-containing protein.	Kelch like family member 38.	0.750
CCDC141	LGI2	ENSOCUP00000014572	ENSOCUP00000004119	Ig-like domain-containing protein.	Leucine rich repeat LGI family member 2.	0.612
CCDC141	PES1	ENSOCUP00000014572	ENSOCUP00000008324	Ig-like domain-containing protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.625
CCDC141	SLC35F1	ENSOCUP00000014572	ENSOCUP00000013146	Ig-like domain-containing protein.	Solute carrier family 35 member F1.	0.611
CCDC141	TEX10	ENSOCUP00000014572	ENSOCUP00000003672	Ig-like domain-containing protein.	Testis expressed 10.	0.605
CCDC141	UNC45B	ENSOCUP00000014572	ENSOCUP00000015976	Ig-like domain-containing protein.	Unc-45 myosin chaperone B.	0.663
CCDC141	ZSWIM2	ENSOCUP00000014572	ENSOCUP00000009573	Ig-like domain-containing protein.	Zinc finger SWIM-type containing 2.	0.614
CER1	CCDC141	ENSOCUP00000008936	ENSOCUP00000014572	Cerberus 1, DAN family BMP antagonist.	Ig-like domain-containing protein.	0.728
EFCAB11	CCDC141	ENSOCUP00000013314	ENSOCUP00000014572	EF-hand calcium binding domain 11.	Ig-like domain-containing protein.	0.802
G1TTX7_RABIT	CCDC141	ENSOCUP00000020500	ENSOCUP00000014572	Uncharacterized protein.	Ig-like domain-containing protein.	0.713
G1TTX7_RABIT	PES1	ENSOCUP00000020500	ENSOCUP00000008324	Uncharacterized protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.625
G1TTX7_RABIT	TEX10	ENSOCUP00000020500	ENSOCUP00000003672	Uncharacterized protein.	Testis expressed 10.	0.605
KLHL38	CCDC141	ENSOCUP00000010127	ENSOCUP00000014572	Kelch like family member 38.	Ig-like domain-containing protein.	0.750
LGI2	CCDC141	ENSOCUP00000004119	ENSOCUP00000014572	Leucine rich repeat LGI family member 2.	Ig-like domain-containing protein.	0.612
PES1	CCDC141	ENSOCUP00000008324	ENSOCUP00000014572	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	Ig-like domain-containing protein.	0.625
PES1	G1TTX7_RABIT	ENSOCUP00000008324	ENSOCUP00000020500	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	Uncharacterized protein.	0.625
PES1	TEX10	ENSOCUP00000008324	ENSOCUP00000003672	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	Testis expressed 10.	0.898