TBCE protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL13A	RP2	ENSOCUP00000018021	ENSOCUP00000004897	Uncharacterized protein.	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	0.552
ARL13A	TBCB	ENSOCUP00000018021	ENSOCUP00000013731	Uncharacterized protein.	Tubulin folding cofactor B.	0.763
ARL13A	TBCC	ENSOCUP00000018021	ENSOCUP00000015433	Uncharacterized protein.	C-CAP/cofactor C-like domain-containing protein.	0.552
ARL13A	TBCD	ENSOCUP00000018021	ENSOCUP00000001982	Uncharacterized protein.	Tubulin folding cofactor D.	0.756
ARL13A	TBCE	ENSOCUP00000018021	ENSOCUP00000015027	Uncharacterized protein.	Uncharacterized protein.	0.741
ENSOCUP00000039195	RP2	ENSOCUP00000039195	ENSOCUP00000004897	Uncharacterized protein.	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	0.626
ENSOCUP00000039195	TBCB	ENSOCUP00000039195	ENSOCUP00000013731	Uncharacterized protein.	Tubulin folding cofactor B.	0.856
ENSOCUP00000039195	TBCC	ENSOCUP00000039195	ENSOCUP00000015433	Uncharacterized protein.	C-CAP/cofactor C-like domain-containing protein.	0.838
ENSOCUP00000039195	TBCD	ENSOCUP00000039195	ENSOCUP00000001982	Uncharacterized protein.	Tubulin folding cofactor D.	0.916
ENSOCUP00000039195	TBCE	ENSOCUP00000039195	ENSOCUP00000015027	Uncharacterized protein.	Uncharacterized protein.	0.852
HAGH	TBCE	ENSOCUP00000024717	ENSOCUP00000015027	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.717
RP2	ARL13A	ENSOCUP00000004897	ENSOCUP00000018021	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Uncharacterized protein.	0.552
RP2	ENSOCUP00000039195	ENSOCUP00000004897	ENSOCUP00000039195	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Uncharacterized protein.	0.626
RP2	TBCA	ENSOCUP00000004897	ENSOCUP00000022954	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Tubulin-specific chaperone A; Tubulin-folding protein; involved in the early step of the tubulin folding pathway.	0.590
RP2	TBCA-2	ENSOCUP00000004897	ENSOCUP00000001827	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Tubulin-specific chaperone A; Belongs to the TBCA family.	0.590
RP2	TBCB	ENSOCUP00000004897	ENSOCUP00000013731	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Tubulin folding cofactor B.	0.686
RP2	TBCD	ENSOCUP00000004897	ENSOCUP00000001982	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Tubulin folding cofactor D.	0.831
RP2	TBCE	ENSOCUP00000004897	ENSOCUP00000015027	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	Uncharacterized protein.	0.811
TBCA	RP2	ENSOCUP00000022954	ENSOCUP00000004897	Tubulin-specific chaperone A; Tubulin-folding protein; involved in the early step of the tubulin folding pathway.	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	0.590
TBCA	TBCB	ENSOCUP00000022954	ENSOCUP00000013731	Tubulin-specific chaperone A; Tubulin-folding protein; involved in the early step of the tubulin folding pathway.	Tubulin folding cofactor B.	0.760