AGBL2 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGBL2

ATP/GTP binding protein like 2. (855 aa)

Predicted Functional Partners:

RARRES1

0.849

LXN

0.846

TMEM192

0.718

PRSS35

0.649

CPXM1

0.637

TTL

0.579

CPA4

0.548

LOC100356501

0.514

ADAMTS3

0.508

PSD4

0.495

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADAMTS3	AGBL2	ENSOCUP00000002651	ENSOCUP00000015057	ADAM metallopeptidase with thrombospondin type 1 motif 3.	ATP/GTP binding protein like 2.	0.508
ADAMTS3	CPXM1	ENSOCUP00000002651	ENSOCUP00000005361	ADAM metallopeptidase with thrombospondin type 1 motif 3.	Carboxypeptidase X, M14 family member 1.	0.557
ADAMTS3	PRSS35	ENSOCUP00000002651	ENSOCUP00000020163	ADAM metallopeptidase with thrombospondin type 1 motif 3.	Serine protease 35.	0.412
AGBL2	ADAMTS3	ENSOCUP00000015057	ENSOCUP00000002651	ATP/GTP binding protein like 2.	ADAM metallopeptidase with thrombospondin type 1 motif 3.	0.508
AGBL2	CPA4	ENSOCUP00000015057	ENSOCUP00000006040	ATP/GTP binding protein like 2.	Carboxypeptidase A4.	0.548
AGBL2	CPXM1	ENSOCUP00000015057	ENSOCUP00000005361	ATP/GTP binding protein like 2.	Carboxypeptidase X, M14 family member 1.	0.637
AGBL2	LOC100356501	ENSOCUP00000015057	ENSOCUP00000013015	ATP/GTP binding protein like 2.	Kazal-like domain-containing protein.	0.514
AGBL2	LXN	ENSOCUP00000015057	ENSOCUP00000022106	ATP/GTP binding protein like 2.	Latexin.	0.846
AGBL2	PRSS35	ENSOCUP00000015057	ENSOCUP00000020163	ATP/GTP binding protein like 2.	Serine protease 35.	0.649
AGBL2	PSD4	ENSOCUP00000015057	ENSOCUP00000003614	ATP/GTP binding protein like 2.	Pleckstrin and Sec7 domain containing 4.	0.495
AGBL2	RARRES1	ENSOCUP00000015057	ENSOCUP00000026324	ATP/GTP binding protein like 2.	Retinoic acid receptor responder 1.	0.849
AGBL2	TMEM192	ENSOCUP00000015057	ENSOCUP00000014059	ATP/GTP binding protein like 2.	Transmembrane protein 192.	0.718
AGBL2	TTL	ENSOCUP00000015057	ENSOCUP00000003488	ATP/GTP binding protein like 2.	Tubulin tyrosine ligase.	0.579
CPA4	AGBL2	ENSOCUP00000006040	ENSOCUP00000015057	Carboxypeptidase A4.	ATP/GTP binding protein like 2.	0.548
CPA4	LXN	ENSOCUP00000006040	ENSOCUP00000022106	Carboxypeptidase A4.	Latexin.	0.832
CPXM1	ADAMTS3	ENSOCUP00000005361	ENSOCUP00000002651	Carboxypeptidase X, M14 family member 1.	ADAM metallopeptidase with thrombospondin type 1 motif 3.	0.557
CPXM1	AGBL2	ENSOCUP00000005361	ENSOCUP00000015057	Carboxypeptidase X, M14 family member 1.	ATP/GTP binding protein like 2.	0.637
CPXM1	PRSS35	ENSOCUP00000005361	ENSOCUP00000020163	Carboxypeptidase X, M14 family member 1.	Serine protease 35.	0.532
LOC100356501	AGBL2	ENSOCUP00000013015	ENSOCUP00000015057	Kazal-like domain-containing protein.	ATP/GTP binding protein like 2.	0.514
LXN	AGBL2	ENSOCUP00000022106	ENSOCUP00000015057	Latexin.	ATP/GTP binding protein like 2.	0.846