STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH18Cadherin 18; Cadherins are calcium-dependent cell adhesion proteins. (790 aa)    
Predicted Functional Partners:
SH3BP5L
SH3 binding domain protein 5 like.
      
 0.685
CTNNB1
Catenin beta 1.
    
 0.651
JUP
Junction plakoglobin.
    
 0.623
TMEM215
Transmembrane protein 215.
   
  
 0.605
CTNND1
Catenin delta 1.
   
 0.601
ARVCF
ARVCF delta catenin family member.
   
 0.583
SP6
Sp6 transcription factor.
     
 0.539
CDH12
Cadherin 12; Cadherins are calcium-dependent cell adhesion proteins.
   
 
0.533
PKD1
Uncharacterized protein.
   
  
 0.523
CTNNA3
Catenin alpha 3.
    
 0.519
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.