G1TLT5_RABIT protein (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G1TLT5_RABIT

Uncharacterized protein. (127 aa)

Predicted Functional Partners:

G1U1Y5_RABIT

0.956

FAU

0.956

ENSOCUP00000046875

0.956

ENSOCUP00000049185

0.956

RPL14

0.889

RPLP1

0.886

RPLP2

0.884

RPL8

0.879

RPL13A

0.878

RPL18A

0.874

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOCUP00000046875	ENSOCUP00000049185	ENSOCUP00000046875	ENSOCUP00000049185	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.912
ENSOCUP00000046875	FAU	ENSOCUP00000046875	ENSOCUP00000042864	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.914
ENSOCUP00000046875	G1TLT5_RABIT	ENSOCUP00000046875	ENSOCUP00000017937	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.956
ENSOCUP00000046875	G1U1Y5_RABIT	ENSOCUP00000046875	ENSOCUP00000023377	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.912
ENSOCUP00000046875	RPL13A	ENSOCUP00000046875	ENSOCUP00000021167	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.999
ENSOCUP00000046875	RPL14	ENSOCUP00000046875	ENSOCUP00000049864	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L14.	0.999
ENSOCUP00000046875	RPL18A	ENSOCUP00000046875	ENSOCUP00000020510	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
ENSOCUP00000046875	RPL8	ENSOCUP00000046875	ENSOCUP00000022437	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L2_C domain-containing protein.	0.998
ENSOCUP00000046875	RPLP1	ENSOCUP00000046875	ENSOCUP00000012960	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein lateral stalk subunit P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
ENSOCUP00000046875	RPLP2	ENSOCUP00000046875	ENSOCUP00000016850	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S acidic ribosomal protein P2; Plays an important role in the elongation step of protein synthesis.	0.999
ENSOCUP00000049185	ENSOCUP00000046875	ENSOCUP00000049185	ENSOCUP00000046875	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.912
ENSOCUP00000049185	FAU	ENSOCUP00000049185	ENSOCUP00000042864	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.911
ENSOCUP00000049185	G1TLT5_RABIT	ENSOCUP00000049185	ENSOCUP00000017937	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.956
ENSOCUP00000049185	G1U1Y5_RABIT	ENSOCUP00000049185	ENSOCUP00000023377	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.911
ENSOCUP00000049185	RPL13A	ENSOCUP00000049185	ENSOCUP00000021167	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.999
ENSOCUP00000049185	RPL14	ENSOCUP00000049185	ENSOCUP00000049864	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L14.	0.999
ENSOCUP00000049185	RPL18A	ENSOCUP00000049185	ENSOCUP00000020510	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
ENSOCUP00000049185	RPL8	ENSOCUP00000049185	ENSOCUP00000022437	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L2_C domain-containing protein.	0.998
ENSOCUP00000049185	RPLP1	ENSOCUP00000049185	ENSOCUP00000012960	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein lateral stalk subunit P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
ENSOCUP00000049185	RPLP2	ENSOCUP00000049185	ENSOCUP00000016850	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S acidic ribosomal protein P2; Plays an important role in the elongation step of protein synthesis.	0.999