SPTSSA protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPTSSA

Uncharacterized protein. (89 aa)

Predicted Functional Partners:

SPTLC1

0.978

SPTLC2

0.921

SPTLC3

0.888

ORMDL3

0.879

ORMDL2

0.814

B4GALT5

0.726

ORMDL1

0.724

SLC35A2

0.709

TMEM184C

0.696

UGCG

0.686

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4GALT5	SLC35A2	ENSOCUP00000042238	ENSOCUP00000010064	Beta-1,4-galactosyltransferase 5.	Solute carrier family 35 member A2.	0.703
B4GALT5	SPTLC1	ENSOCUP00000042238	ENSOCUP00000030336	Beta-1,4-galactosyltransferase 5.	Serine palmitoyltransferase long chain base subunit 1.	0.430
B4GALT5	SPTSSA	ENSOCUP00000042238	ENSOCUP00000019035	Beta-1,4-galactosyltransferase 5.	Uncharacterized protein.	0.726
B4GALT5	UGCG	ENSOCUP00000042238	ENSOCUP00000036119	Beta-1,4-galactosyltransferase 5.	UDP-glucose ceramide glucosyltransferase.	0.726
ORMDL1	SPTLC1	ENSOCUP00000010760	ENSOCUP00000030336	Uncharacterized protein.	Serine palmitoyltransferase long chain base subunit 1.	0.955
ORMDL1	SPTLC2	ENSOCUP00000010760	ENSOCUP00000040528	Uncharacterized protein.	Serine palmitoyltransferase long chain base subunit 2.	0.895
ORMDL1	SPTLC3	ENSOCUP00000010760	ENSOCUP00000001125	Uncharacterized protein.	Serine palmitoyltransferase long chain base subunit 3.	0.894
ORMDL1	SPTSSA	ENSOCUP00000010760	ENSOCUP00000019035	Uncharacterized protein.	Uncharacterized protein.	0.724
ORMDL2	SPTLC1	ENSOCUP00000011230	ENSOCUP00000030336	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Serine palmitoyltransferase long chain base subunit 1.	0.942
ORMDL2	SPTLC2	ENSOCUP00000011230	ENSOCUP00000040528	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Serine palmitoyltransferase long chain base subunit 2.	0.876
ORMDL2	SPTLC3	ENSOCUP00000011230	ENSOCUP00000001125	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Serine palmitoyltransferase long chain base subunit 3.	0.834
ORMDL2	SPTSSA	ENSOCUP00000011230	ENSOCUP00000019035	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Uncharacterized protein.	0.814
ORMDL2	UGCG	ENSOCUP00000011230	ENSOCUP00000036119	ORM1-like protein; Negative regulator of sphingolipid synthesis.	UDP-glucose ceramide glucosyltransferase.	0.485
ORMDL3	SPTLC1	ENSOCUP00000008326	ENSOCUP00000030336	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Serine palmitoyltransferase long chain base subunit 1.	0.972
ORMDL3	SPTLC2	ENSOCUP00000008326	ENSOCUP00000040528	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Serine palmitoyltransferase long chain base subunit 2.	0.930
ORMDL3	SPTLC3	ENSOCUP00000008326	ENSOCUP00000001125	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Serine palmitoyltransferase long chain base subunit 3.	0.953
ORMDL3	SPTSSA	ENSOCUP00000008326	ENSOCUP00000019035	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Uncharacterized protein.	0.879
SLC35A2	B4GALT5	ENSOCUP00000010064	ENSOCUP00000042238	Solute carrier family 35 member A2.	Beta-1,4-galactosyltransferase 5.	0.703
SLC35A2	SPTLC1	ENSOCUP00000010064	ENSOCUP00000030336	Solute carrier family 35 member A2.	Serine palmitoyltransferase long chain base subunit 1.	0.414
SLC35A2	SPTSSA	ENSOCUP00000010064	ENSOCUP00000019035	Solute carrier family 35 member A2.	Uncharacterized protein.	0.709