SF3B1 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SF3B1

SF3b1 domain-containing protein. (1120 aa)

Predicted Functional Partners:

SF3B3

0.974

SF3A3

0.960

SF3B2

0.957

SF3B4

0.952

SF3A1

0.952

SF3B6

0.950

SF3B5

0.946

PHF5A

0.942

EFTUD2

0.929

DDX42

0.922

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX42	EFTUD2	ENSOCUP00000003725	ENSOCUP00000043628	DEAD-box helicase 42.	Elongation factor Tu GTP binding domain containing 2.	0.630
DDX42	PHF5A	ENSOCUP00000003725	ENSOCUP00000042841	DEAD-box helicase 42.	PHD finger protein 5A.	0.917
DDX42	SF3A1	ENSOCUP00000003725	ENSOCUP00000028450	DEAD-box helicase 42.	Splicing factor 3a subunit 1.	0.730
DDX42	SF3A3	ENSOCUP00000003725	ENSOCUP00000004692	DEAD-box helicase 42.	Splicing factor 3a subunit 3.	0.685
DDX42	SF3B1	ENSOCUP00000003725	ENSOCUP00000021051	DEAD-box helicase 42.	SF3b1 domain-containing protein.	0.922
DDX42	SF3B2	ENSOCUP00000003725	ENSOCUP00000008547	DEAD-box helicase 42.	Splicing factor 3b subunit 2.	0.997
DDX42	SF3B3	ENSOCUP00000003725	ENSOCUP00000003584	DEAD-box helicase 42.	Splicing factor 3b subunit 3.	0.999
DDX42	SF3B4	ENSOCUP00000003725	ENSOCUP00000003976	DEAD-box helicase 42.	Splicing factor 3b subunit 4.	0.997
DDX42	SF3B5	ENSOCUP00000003725	ENSOCUP00000007556	DEAD-box helicase 42.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.996
DDX42	SF3B6	ENSOCUP00000003725	ENSOCUP00000017726	DEAD-box helicase 42.	Splicing factor 3b subunit 6.	0.994
EFTUD2	DDX42	ENSOCUP00000043628	ENSOCUP00000003725	Elongation factor Tu GTP binding domain containing 2.	DEAD-box helicase 42.	0.630
EFTUD2	PHF5A	ENSOCUP00000043628	ENSOCUP00000042841	Elongation factor Tu GTP binding domain containing 2.	PHD finger protein 5A.	0.875
EFTUD2	SF3A1	ENSOCUP00000043628	ENSOCUP00000028450	Elongation factor Tu GTP binding domain containing 2.	Splicing factor 3a subunit 1.	0.951
EFTUD2	SF3A3	ENSOCUP00000043628	ENSOCUP00000004692	Elongation factor Tu GTP binding domain containing 2.	Splicing factor 3a subunit 3.	0.961
EFTUD2	SF3B1	ENSOCUP00000043628	ENSOCUP00000021051	Elongation factor Tu GTP binding domain containing 2.	SF3b1 domain-containing protein.	0.929
EFTUD2	SF3B2	ENSOCUP00000043628	ENSOCUP00000008547	Elongation factor Tu GTP binding domain containing 2.	Splicing factor 3b subunit 2.	0.944
EFTUD2	SF3B3	ENSOCUP00000043628	ENSOCUP00000003584	Elongation factor Tu GTP binding domain containing 2.	Splicing factor 3b subunit 3.	0.995
EFTUD2	SF3B4	ENSOCUP00000043628	ENSOCUP00000003976	Elongation factor Tu GTP binding domain containing 2.	Splicing factor 3b subunit 4.	0.979
EFTUD2	SF3B5	ENSOCUP00000043628	ENSOCUP00000007556	Elongation factor Tu GTP binding domain containing 2.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.862
EFTUD2	SF3B6	ENSOCUP00000043628	ENSOCUP00000017726	Elongation factor Tu GTP binding domain containing 2.	Splicing factor 3b subunit 6.	0.783