BCL7B protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BCL7B

BAF chromatin remodeling complex subunit BCL7B. (204 aa)

Predicted Functional Partners:

BRD9

0.893

PBRM1

0.755

SS18L1

0.751

SMARCD1

0.742

SMARCD3

0.742

ARID1B

0.737

ARID2

0.733

SMARCD2

0.706

CC2D1B

0.700

SMARCE1

0.694

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID1B	ARID2	ENSOCUP00000032809	ENSOCUP00000011457	AT-rich interaction domain 1B.	AT-rich interaction domain 2.	0.946
ARID1B	BCL7B	ENSOCUP00000032809	ENSOCUP00000021957	AT-rich interaction domain 1B.	BAF chromatin remodeling complex subunit BCL7B.	0.737
ARID1B	BRD9	ENSOCUP00000032809	ENSOCUP00000008743	AT-rich interaction domain 1B.	Bromodomain containing 9.	0.848
ARID1B	PBRM1	ENSOCUP00000032809	ENSOCUP00000008471	AT-rich interaction domain 1B.	Polybromo 1.	0.954
ARID1B	SMARCD1	ENSOCUP00000032809	ENSOCUP00000041044	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.984
ARID1B	SMARCD2	ENSOCUP00000032809	ENSOCUP00000003746	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.950
ARID1B	SMARCD3	ENSOCUP00000032809	ENSOCUP00000048837	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.950
ARID1B	SMARCE1	ENSOCUP00000032809	ENSOCUP00000007761	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.987
ARID1B	SS18L1	ENSOCUP00000032809	ENSOCUP00000023150	AT-rich interaction domain 1B.	Uncharacterized protein.	0.564
ARID2	ARID1B	ENSOCUP00000011457	ENSOCUP00000032809	AT-rich interaction domain 2.	AT-rich interaction domain 1B.	0.946
ARID2	BCL7B	ENSOCUP00000011457	ENSOCUP00000021957	AT-rich interaction domain 2.	BAF chromatin remodeling complex subunit BCL7B.	0.733
ARID2	BRD9	ENSOCUP00000011457	ENSOCUP00000008743	AT-rich interaction domain 2.	Bromodomain containing 9.	0.971
ARID2	PBRM1	ENSOCUP00000011457	ENSOCUP00000008471	AT-rich interaction domain 2.	Polybromo 1.	0.999
ARID2	SMARCD1	ENSOCUP00000011457	ENSOCUP00000041044	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.995
ARID2	SMARCD2	ENSOCUP00000011457	ENSOCUP00000003746	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.967
ARID2	SMARCD3	ENSOCUP00000011457	ENSOCUP00000048837	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.968
ARID2	SMARCE1	ENSOCUP00000011457	ENSOCUP00000007761	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.995
ARID2	SS18L1	ENSOCUP00000011457	ENSOCUP00000023150	AT-rich interaction domain 2.	Uncharacterized protein.	0.689
BCL7B	ARID1B	ENSOCUP00000021957	ENSOCUP00000032809	BAF chromatin remodeling complex subunit BCL7B.	AT-rich interaction domain 1B.	0.737
BCL7B	ARID2	ENSOCUP00000021957	ENSOCUP00000011457	BAF chromatin remodeling complex subunit BCL7B.	AT-rich interaction domain 2.	0.733