STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB39ARAB39A, member RAS oncogene family. (217 aa)    
Predicted Functional Partners:
ITSN2
Intersectin 2.
    
 0.880
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.866
COG3
Component of oligomeric golgi complex 3.
   
 
 0.782
ITSN1
Intersectin 1.
    
 0.764
RAB3IP
RAB3A interacting protein.
    
 0.762
CHM
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.743
LOC100346323
Uncharacterized protein.
   
 0.700
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.698
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.688
COG5
Component of oligomeric golgi complex 5.
     
 0.676
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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