Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DDX6 | DHX9 | ENSOCUP00000005068 | ENSOCUP00000029909 | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | DExH-box helicase 9. | 0.728 |
DDX6 | FUS | ENSOCUP00000005068 | ENSOCUP00000020899 | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | FUS RNA binding protein. | 0.436 |
DDX6 | HNRNPK | ENSOCUP00000005068 | ENSOCUP00000008932 | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | Heterogeneous nuclear ribonucleoprotein K; One of the major pre-mRNA-binding proteins. Binds tenaciously to poly(C) sequences. Likely to play a role in the nuclear metabolism of hnRNAs, particularly for pre-mRNAs that contain cytidine-rich sequences. Can also bind poly(C) single-stranded DNA. Plays an important role in p53/TP53 response to DNA damage, acting at the level of both transcription activation and repression. When sumoylated, acts as a transcriptional coactivator of p53/TP53, playing a role in p21/CDKN1A and 14-3-3 sigma/SFN induction. As far as transcription repression is co [...] | 0.513 |
DDX6 | PABPC1 | ENSOCUP00000005068 | ENSOCUP00000003762 | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.822 |
DDX6 | YBX1 | ENSOCUP00000005068 | ENSOCUP00000023346 | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | Y-box-binding protein 1; DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing, DNA repair and transcription regulation. Predominantly acts as a RNA-binding protein: binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C) (By similarity). Promotes mRNA stabilization: acts by binding to m5C- containing mRNAs and recruiting the mRNA stability maintainer ELAVL1, thereby preventing mRNA decay (By similarity). Component of the CRD- mediated [...] | 0.784 |
DHX9 | DDX6 | ENSOCUP00000029909 | ENSOCUP00000005068 | DExH-box helicase 9. | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | 0.728 |
DHX9 | FUS | ENSOCUP00000029909 | ENSOCUP00000020899 | DExH-box helicase 9. | FUS RNA binding protein. | 0.710 |
DHX9 | HNRNPA1 | ENSOCUP00000029909 | ENSOCUP00000011492 | DExH-box helicase 9. | Uncharacterized protein. | 0.851 |
DHX9 | HNRNPK | ENSOCUP00000029909 | ENSOCUP00000008932 | DExH-box helicase 9. | Heterogeneous nuclear ribonucleoprotein K; One of the major pre-mRNA-binding proteins. Binds tenaciously to poly(C) sequences. Likely to play a role in the nuclear metabolism of hnRNAs, particularly for pre-mRNAs that contain cytidine-rich sequences. Can also bind poly(C) single-stranded DNA. Plays an important role in p53/TP53 response to DNA damage, acting at the level of both transcription activation and repression. When sumoylated, acts as a transcriptional coactivator of p53/TP53, playing a role in p21/CDKN1A and 14-3-3 sigma/SFN induction. As far as transcription repression is co [...] | 0.771 |
DHX9 | HNRNPU | ENSOCUP00000029909 | ENSOCUP00000044849 | DExH-box helicase 9. | Heterogeneous nuclear ribonucleoprotein U. | 0.968 |
DHX9 | PABPC1 | ENSOCUP00000029909 | ENSOCUP00000003762 | DExH-box helicase 9. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.702 |
DHX9 | SYNCRIP | ENSOCUP00000029909 | ENSOCUP00000017167 | DExH-box helicase 9. | Uncharacterized protein. | 0.900 |
DHX9 | YBX1 | ENSOCUP00000029909 | ENSOCUP00000023346 | DExH-box helicase 9. | Y-box-binding protein 1; DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing, DNA repair and transcription regulation. Predominantly acts as a RNA-binding protein: binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C) (By similarity). Promotes mRNA stabilization: acts by binding to m5C- containing mRNAs and recruiting the mRNA stability maintainer ELAVL1, thereby preventing mRNA decay (By similarity). Component of the CRD- mediated [...] | 0.822 |
FUS | DDX6 | ENSOCUP00000020899 | ENSOCUP00000005068 | FUS RNA binding protein. | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | 0.436 |
FUS | DHX9 | ENSOCUP00000020899 | ENSOCUP00000029909 | FUS RNA binding protein. | DExH-box helicase 9. | 0.710 |
FUS | HNRNPA1 | ENSOCUP00000020899 | ENSOCUP00000011492 | FUS RNA binding protein. | Uncharacterized protein. | 0.609 |
FUS | HNRNPK | ENSOCUP00000020899 | ENSOCUP00000008932 | FUS RNA binding protein. | Heterogeneous nuclear ribonucleoprotein K; One of the major pre-mRNA-binding proteins. Binds tenaciously to poly(C) sequences. Likely to play a role in the nuclear metabolism of hnRNAs, particularly for pre-mRNAs that contain cytidine-rich sequences. Can also bind poly(C) single-stranded DNA. Plays an important role in p53/TP53 response to DNA damage, acting at the level of both transcription activation and repression. When sumoylated, acts as a transcriptional coactivator of p53/TP53, playing a role in p21/CDKN1A and 14-3-3 sigma/SFN induction. As far as transcription repression is co [...] | 0.781 |
FUS | HNRNPU | ENSOCUP00000020899 | ENSOCUP00000044849 | FUS RNA binding protein. | Heterogeneous nuclear ribonucleoprotein U. | 0.752 |
FUS | PABPC1 | ENSOCUP00000020899 | ENSOCUP00000003762 | FUS RNA binding protein. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.477 |
FUS | SMAD3 | ENSOCUP00000020899 | ENSOCUP00000027151 | FUS RNA binding protein. | SMAD family member 3. | 0.427 |
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