STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL8A1Collagen alpha-1(VIII) chain; Macromolecular component of the subendothelium. Major component of the Descemet's membrane (basement membrane) of corneal endothelial cells. Also component of the endothelia of blood vessels. Necessary for migration and proliferation of vascular smooth muscle cells and thus, has a potential role in the maintenance of vessel wall integrity and structure, in particular in atherogenesis (By similarity). (744 aa)    
Predicted Functional Partners:
COL6A2
Uncharacterized protein.
 
 
 0.926
COL6A3
Uncharacterized protein.
 
 
 
 0.887
COL8A2
Collagen type VIII alpha 2 chain.
  
0.840
COL5A1
Fibrillar collagen NC1 domain-containing protein.
 
 
 0.791
ENSOCUP00000037812
Uncharacterized protein.
 
 
 
 0.785
COL18A1
Endostatin domain-containing protein.
 
  
 0.711
COL1A2
Collagen alpha-2(I) chain; Type I collagen is a member of group I collagen (fibrillar forming collagen); Belongs to the fibrillar collagen family.
  
 
0.674
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.653
COL3A1
Collagen type III alpha 1 chain.
  
 
0.604
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.598
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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