STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MAGOHBMago homolog B, exon junction complex subunit. (148 aa)    
Predicted Functional Partners:
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.996
UPF3A
Smg4_UPF3 domain-containing protein.
    
 0.980
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.980
CASC3
CASC3 exon junction complex subunit.
    
 0.980
G1TZC2_RABIT
Uncharacterized protein.
   
  0.949
ENSOCUP00000032071
RanBD1 domain-containing protein.
   
  0.949
ACIN1
Apoptotic chromatin condensation inducer 1.
    
 0.921
POLDIP3
DNA polymerase delta interacting protein 3.
   
 0.920
MAGOH
Mago homolog, exon junction complex subunit.
  
  
 
0.900
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.899
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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