SPATA19 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPATA19

Spermatogenesis associated 19. (154 aa)

Predicted Functional Partners:

SPATA18

0.768

OAZ3

0.736

SPA17

0.699

DKKL1

0.695

ODF1

0.688

ROPN1

0.664

SUN5

0.649

SPATA3

0.645

TDRD6

0.640

SPATA6

0.636

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DKKL1	SPATA19	ENSOCUP00000007569	ENSOCUP00000026923	Uncharacterized protein.	Spermatogenesis associated 19.	0.695
OAZ3	ODF1	ENSOCUP00000019600	ENSOCUP00000014796	Uncharacterized protein.	Outer dense fiber of sperm tails 1.	0.775
OAZ3	ROPN1	ENSOCUP00000019600	ENSOCUP00000012852	Uncharacterized protein.	Uncharacterized protein.	0.521
OAZ3	SPA17	ENSOCUP00000019600	ENSOCUP00000042432	Uncharacterized protein.	Sperm surface protein Sp17; Sperm surface zona pellucida binding protein. Helps to bind spermatozoa to the zona pellucida with high affinity. Might function in binding zona pellucida and carbohydrates.	0.485
OAZ3	SPATA18	ENSOCUP00000019600	ENSOCUP00000030186	Uncharacterized protein.	Spermatogenesis associated 18.	0.582
OAZ3	SPATA19	ENSOCUP00000019600	ENSOCUP00000026923	Uncharacterized protein.	Spermatogenesis associated 19.	0.736
OAZ3	SPATA3	ENSOCUP00000019600	ENSOCUP00000035186	Uncharacterized protein.	Spermatogenesis associated 3.	0.740
OAZ3	SPATA6	ENSOCUP00000019600	ENSOCUP00000029242	Uncharacterized protein.	Spermatogenesis associated 6.	0.736
OAZ3	SUN5	ENSOCUP00000019600	ENSOCUP00000022552	Uncharacterized protein.	Sad1 and UNC84 domain containing 5.	0.595
ODF1	OAZ3	ENSOCUP00000014796	ENSOCUP00000019600	Outer dense fiber of sperm tails 1.	Uncharacterized protein.	0.775
ODF1	ROPN1	ENSOCUP00000014796	ENSOCUP00000012852	Outer dense fiber of sperm tails 1.	Uncharacterized protein.	0.706
ODF1	SPA17	ENSOCUP00000014796	ENSOCUP00000042432	Outer dense fiber of sperm tails 1.	Sperm surface protein Sp17; Sperm surface zona pellucida binding protein. Helps to bind spermatozoa to the zona pellucida with high affinity. Might function in binding zona pellucida and carbohydrates.	0.540
ODF1	SPATA19	ENSOCUP00000014796	ENSOCUP00000026923	Outer dense fiber of sperm tails 1.	Spermatogenesis associated 19.	0.688
ODF1	SPATA3	ENSOCUP00000014796	ENSOCUP00000035186	Outer dense fiber of sperm tails 1.	Spermatogenesis associated 3.	0.710
ODF1	SPATA6	ENSOCUP00000014796	ENSOCUP00000029242	Outer dense fiber of sperm tails 1.	Spermatogenesis associated 6.	0.804
ODF1	SUN5	ENSOCUP00000014796	ENSOCUP00000022552	Outer dense fiber of sperm tails 1.	Sad1 and UNC84 domain containing 5.	0.737
ROPN1	OAZ3	ENSOCUP00000012852	ENSOCUP00000019600	Uncharacterized protein.	Uncharacterized protein.	0.521
ROPN1	ODF1	ENSOCUP00000012852	ENSOCUP00000014796	Uncharacterized protein.	Outer dense fiber of sperm tails 1.	0.706
ROPN1	SPA17	ENSOCUP00000012852	ENSOCUP00000042432	Uncharacterized protein.	Sperm surface protein Sp17; Sperm surface zona pellucida binding protein. Helps to bind spermatozoa to the zona pellucida with high affinity. Might function in binding zona pellucida and carbohydrates.	0.826
ROPN1	SPATA19	ENSOCUP00000012852	ENSOCUP00000026923	Uncharacterized protein.	Spermatogenesis associated 19.	0.664