ENSOCUP00000031459 protein (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSOCUP00000031459

Uncharacterized protein. (208 aa)

Predicted Functional Partners:

MTA2

0.585

MTA1

0.585

MTA3

0.585

ARID4A

0.544

ARID4B

0.544

NYNRIN

0.525

RBBP4

0.483

WDR73

0.483

G1TRP6_RABIT

0.483

ENSOCUP00000028817

0.483

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSOCUP00000000914	ENSOCUP00000005708	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.820
ARID4A	ENSOCUP00000028817	ENSOCUP00000000914	ENSOCUP00000028817	AT-rich interaction domain 4A.	WD_REPEATS_REGION domain-containing protein.	0.910
ARID4A	ENSOCUP00000031459	ENSOCUP00000000914	ENSOCUP00000031459	AT-rich interaction domain 4A.	Uncharacterized protein.	0.544
ARID4A	G1TRP6_RABIT	ENSOCUP00000000914	ENSOCUP00000019704	AT-rich interaction domain 4A.	CAF1C_H4-bd domain-containing protein.	0.910
ARID4A	MTA1	ENSOCUP00000000914	ENSOCUP00000009759	AT-rich interaction domain 4A.	Uncharacterized protein.	0.700
ARID4A	MTA2	ENSOCUP00000000914	ENSOCUP00000007644	AT-rich interaction domain 4A.	Metastasis associated 1 family member 2.	0.687
ARID4A	MTA3	ENSOCUP00000000914	ENSOCUP00000010600	AT-rich interaction domain 4A.	Metastasis associated 1 family member 3.	0.692
ARID4A	NYNRIN	ENSOCUP00000000914	ENSOCUP00000013029	AT-rich interaction domain 4A.	NYN domain and retroviral integrase containing.	0.715
ARID4A	RBBP4	ENSOCUP00000000914	ENSOCUP00000000814	AT-rich interaction domain 4A.	WD_REPEATS_REGION domain-containing protein.	0.931
ARID4A	WDR73	ENSOCUP00000000914	ENSOCUP00000015345	AT-rich interaction domain 4A.	WD repeat domain 73.	0.910
ARID4B	ARID4A	ENSOCUP00000005708	ENSOCUP00000000914	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.820
ARID4B	ENSOCUP00000028817	ENSOCUP00000005708	ENSOCUP00000028817	AT-rich interaction domain 4B.	WD_REPEATS_REGION domain-containing protein.	0.910
ARID4B	ENSOCUP00000031459	ENSOCUP00000005708	ENSOCUP00000031459	AT-rich interaction domain 4B.	Uncharacterized protein.	0.544
ARID4B	G1TRP6_RABIT	ENSOCUP00000005708	ENSOCUP00000019704	AT-rich interaction domain 4B.	CAF1C_H4-bd domain-containing protein.	0.910
ARID4B	MTA1	ENSOCUP00000005708	ENSOCUP00000009759	AT-rich interaction domain 4B.	Uncharacterized protein.	0.712
ARID4B	MTA2	ENSOCUP00000005708	ENSOCUP00000007644	AT-rich interaction domain 4B.	Metastasis associated 1 family member 2.	0.690
ARID4B	MTA3	ENSOCUP00000005708	ENSOCUP00000010600	AT-rich interaction domain 4B.	Metastasis associated 1 family member 3.	0.704
ARID4B	NYNRIN	ENSOCUP00000005708	ENSOCUP00000013029	AT-rich interaction domain 4B.	NYN domain and retroviral integrase containing.	0.712
ARID4B	RBBP4	ENSOCUP00000005708	ENSOCUP00000000814	AT-rich interaction domain 4B.	WD_REPEATS_REGION domain-containing protein.	0.919
ARID4B	WDR73	ENSOCUP00000005708	ENSOCUP00000015345	AT-rich interaction domain 4B.	WD repeat domain 73.	0.910