Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ENSOCUP00000012913 | FUS | ENSOCUP00000012913 | ENSOCUP00000020899 | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | FUS RNA binding protein. | 0.665 |
ENSOCUP00000012913 | HNRNPA2B1-2 | ENSOCUP00000012913 | ENSOCUP00000037182 | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | Heterogeneous nuclear ribonucleoprotein A2/B1. | 0.928 |
ENSOCUP00000012913 | HNRNPK | ENSOCUP00000012913 | ENSOCUP00000008932 | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | Heterogeneous nuclear ribonucleoprotein K; One of the major pre-mRNA-binding proteins. Binds tenaciously to poly(C) sequences. Likely to play a role in the nuclear metabolism of hnRNAs, particularly for pre-mRNAs that contain cytidine-rich sequences. Can also bind poly(C) single-stranded DNA. Plays an important role in p53/TP53 response to DNA damage, acting at the level of both transcription activation and repression. When sumoylated, acts as a transcriptional coactivator of p53/TP53, playing a role in p21/CDKN1A and 14-3-3 sigma/SFN induction. As far as transcription repression is co [...] | 0.833 |
ENSOCUP00000012913 | HNRNPL | ENSOCUP00000012913 | ENSOCUP00000023948 | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | Heterogeneous nuclear ribonucleoprotein L; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.806 |
ENSOCUP00000012913 | HNRNPU | ENSOCUP00000012913 | ENSOCUP00000044849 | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | Heterogeneous nuclear ribonucleoprotein U. | 0.872 |
ENSOCUP00000012913 | MATR3 | ENSOCUP00000012913 | ENSOCUP00000021695 | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | Uncharacterized protein. | 0.856 |
ENSOCUP00000012913 | SRSF3 | ENSOCUP00000012913 | ENSOCUP00000005776 | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | Serine and arginine rich splicing factor 3. | 0.842 |
ENSOCUP00000012913 | YTHDC1 | ENSOCUP00000012913 | ENSOCUP00000013653 | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | YTH domain containing 1. | 0.886 |
ENSOCUP00000012913 | YTHDF1 | ENSOCUP00000012913 | ENSOCUP00000027654 | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | YTH N6-methyladenosine RNA binding protein 1. | 0.854 |
FUS | ENSOCUP00000012913 | ENSOCUP00000020899 | ENSOCUP00000012913 | FUS RNA binding protein. | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | 0.665 |
FUS | HNRNPA2B1-2 | ENSOCUP00000020899 | ENSOCUP00000037182 | FUS RNA binding protein. | Heterogeneous nuclear ribonucleoprotein A2/B1. | 0.848 |
FUS | HNRNPC | ENSOCUP00000020899 | ENSOCUP00000000300 | FUS RNA binding protein. | Heterogeneous nuclear ribonucleoprotein C; Binds pre-mRNA and nucleates the assembly of 40S hnRNP particles. Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and modulates the stability and the level of translation of bound mRNA molecules. Single HNRNPC tetramers bind 230-240 nucleotides. Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role in the early steps of spliceosome assembly and pre-mRNA splicing. N6-methyladenosine (m6A) has been shown to alter the local structure in mRNAs and long non-coding RNAs (lncRNAs) via a mechanism named 'm(6)A-switch', facilit [...] | 0.649 |
FUS | HNRNPK | ENSOCUP00000020899 | ENSOCUP00000008932 | FUS RNA binding protein. | Heterogeneous nuclear ribonucleoprotein K; One of the major pre-mRNA-binding proteins. Binds tenaciously to poly(C) sequences. Likely to play a role in the nuclear metabolism of hnRNAs, particularly for pre-mRNAs that contain cytidine-rich sequences. Can also bind poly(C) single-stranded DNA. Plays an important role in p53/TP53 response to DNA damage, acting at the level of both transcription activation and repression. When sumoylated, acts as a transcriptional coactivator of p53/TP53, playing a role in p21/CDKN1A and 14-3-3 sigma/SFN induction. As far as transcription repression is co [...] | 0.781 |
FUS | HNRNPL | ENSOCUP00000020899 | ENSOCUP00000023948 | FUS RNA binding protein. | Heterogeneous nuclear ribonucleoprotein L; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.835 |
FUS | HNRNPU | ENSOCUP00000020899 | ENSOCUP00000044849 | FUS RNA binding protein. | Heterogeneous nuclear ribonucleoprotein U. | 0.752 |
FUS | MATR3 | ENSOCUP00000020899 | ENSOCUP00000021695 | FUS RNA binding protein. | Uncharacterized protein. | 0.889 |
FUS | SRSF3 | ENSOCUP00000020899 | ENSOCUP00000005776 | FUS RNA binding protein. | Serine and arginine rich splicing factor 3. | 0.771 |
HNRNPA2B1-2 | ENSOCUP00000012913 | ENSOCUP00000037182 | ENSOCUP00000012913 | Heterogeneous nuclear ribonucleoprotein A2/B1. | Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA. | 0.928 |
HNRNPA2B1-2 | FUS | ENSOCUP00000037182 | ENSOCUP00000020899 | Heterogeneous nuclear ribonucleoprotein A2/B1. | FUS RNA binding protein. | 0.848 |
HNRNPA2B1-2 | HNRNPC | ENSOCUP00000037182 | ENSOCUP00000000300 | Heterogeneous nuclear ribonucleoprotein A2/B1. | Heterogeneous nuclear ribonucleoprotein C; Binds pre-mRNA and nucleates the assembly of 40S hnRNP particles. Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and modulates the stability and the level of translation of bound mRNA molecules. Single HNRNPC tetramers bind 230-240 nucleotides. Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role in the early steps of spliceosome assembly and pre-mRNA splicing. N6-methyladenosine (m6A) has been shown to alter the local structure in mRNAs and long non-coding RNAs (lncRNAs) via a mechanism named 'm(6)A-switch', facilit [...] | 0.928 |
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