MAGED4B protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MAGED4B

MAGE domain-containing protein. (789 aa)

Predicted Functional Partners:

SMC5

0.790

SMC6

0.611

NSMCE4A

0.607

NSMCE2

0.579

HOXB6

0.533

CIR1

0.526

ENSOCUP00000034643

0.523

NSMCE1

0.523

HOXD13

0.507

ENSOCUP00000041432

0.500

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIR1	MAGED4B	ENSOCUP00000026357	ENSOCUP00000037222	Corepressor interacting with RBPJ, 1.	MAGE domain-containing protein.	0.526
ENSOCUP00000034643	ENSOCUP00000041432	ENSOCUP00000034643	ENSOCUP00000041432	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSOCUP00000034643	MAGED4B	ENSOCUP00000034643	ENSOCUP00000037222	Uncharacterized protein.	MAGE domain-containing protein.	0.523
ENSOCUP00000034643	NSMCE2	ENSOCUP00000034643	ENSOCUP00000040852	Uncharacterized protein.	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	0.960
ENSOCUP00000034643	NSMCE4A	ENSOCUP00000034643	ENSOCUP00000000713	Uncharacterized protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.963
ENSOCUP00000034643	SMC5	ENSOCUP00000034643	ENSOCUP00000011406	Uncharacterized protein.	SMC_N domain-containing protein.	0.960
ENSOCUP00000034643	SMC6	ENSOCUP00000034643	ENSOCUP00000014879	Uncharacterized protein.	Uncharacterized protein.	0.960
ENSOCUP00000041432	ENSOCUP00000034643	ENSOCUP00000041432	ENSOCUP00000034643	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSOCUP00000041432	MAGED4B	ENSOCUP00000041432	ENSOCUP00000037222	Uncharacterized protein.	MAGE domain-containing protein.	0.500
ENSOCUP00000041432	NSMCE1	ENSOCUP00000041432	ENSOCUP00000044883	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSOCUP00000041432	NSMCE2	ENSOCUP00000041432	ENSOCUP00000040852	Uncharacterized protein.	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	0.960
ENSOCUP00000041432	NSMCE4A	ENSOCUP00000041432	ENSOCUP00000000713	Uncharacterized protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.962
ENSOCUP00000041432	SMC5	ENSOCUP00000041432	ENSOCUP00000011406	Uncharacterized protein.	SMC_N domain-containing protein.	0.969
ENSOCUP00000041432	SMC6	ENSOCUP00000041432	ENSOCUP00000014879	Uncharacterized protein.	Uncharacterized protein.	0.900
HOXB6	MAGED4B	ENSOCUP00000009940	ENSOCUP00000037222	Homeobox B6.	MAGE domain-containing protein.	0.533
HOXD13	MAGED4B	ENSOCUP00000026308	ENSOCUP00000037222	Homeobox D13.	MAGE domain-containing protein.	0.507
MAGED4B	CIR1	ENSOCUP00000037222	ENSOCUP00000026357	MAGE domain-containing protein.	Corepressor interacting with RBPJ, 1.	0.526
MAGED4B	ENSOCUP00000034643	ENSOCUP00000037222	ENSOCUP00000034643	MAGE domain-containing protein.	Uncharacterized protein.	0.523
MAGED4B	ENSOCUP00000041432	ENSOCUP00000037222	ENSOCUP00000041432	MAGE domain-containing protein.	Uncharacterized protein.	0.500
MAGED4B	HOXB6	ENSOCUP00000037222	ENSOCUP00000009940	MAGE domain-containing protein.	Homeobox B6.	0.533