STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MINDY1MINDY lysine 48 deubiquitinase 1. (474 aa)    
Predicted Functional Partners:
ENSOCUP00000027960
Uncharacterized protein.
 
     0.912
MINDY4
MINDY lysine 48 deubiquitinase 4.
      
 0.761
UBB
Ubiquitin; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11- [...]
    
 
 0.713
ENSOCUP00000030467
Uncharacterized protein.
    
 
 0.713
G1SK22_RABIT
Ubiquitin-like domain-containing protein.
    
   0.697
G1TZL0_RABIT
Ubiquitin-like domain-containing protein.
    
   0.697
MINDY3
MINDY lysine 48 deubiquitinase 3.
      
 0.627
ENSOCUP00000044498
Ribosomal_L40e domain-containing protein.
   
   0.601
C1orf35
Chromosome 1 open reading frame 35.
      
 0.568
FAM163A
Family with sequence similarity 163 member A.
      
 0.568
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.